Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_G17
         (849 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    38   0.001
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    30   0.48 
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    27   3.4  
SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor Vp...    27   4.4  
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom...    26   5.9  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    26   7.8  

>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 24/76 (31%), Positives = 40/76 (52%)
 Frame = +3

Query: 132 DIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQ 311
           DI   FD + H+ LI  L +     R + +IR  L N  +      T +R ++   G PQ
Sbjct: 370 DIKACFDSIPHDKLIALLSSKIKDQRFIQLIRKAL-NAGYL-----TENRYKYDIVGTPQ 423

Query: 312 GSALSPLLFSLYINDI 359
           GS +SP+L ++Y++ +
Sbjct: 424 GSIVSPILANIYLHQL 439


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
 Frame = +1

Query: 247 RSDIESRERVPGPVTSQPESRKAPPSPRYYSVCISTIYPGLRRPIW-RSSPMTPPSTTRV 423
           ++D+    RVP P  S   + K+PPS       I +  P L+ P   RSS  +P  T   
Sbjct: 184 KTDLGKPARVPSPKKSLSSTIKSPPSRVKLPTSILSKSPPLKVPNKNRSSTFSPLRTPTS 243

Query: 424 GRRRCFIDDFRPQLPP 471
             +   I D     PP
Sbjct: 244 SSKTFVIVDHSTPSPP 259


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +1

Query: 256 IESRERVPGPVTSQPESRKAPPSPRYYSVCISTIYPGLRRPIWRSSPMTPPS 411
           + +++R   P+   P  R  PP  R  +  I  I PGL      SS  TP S
Sbjct: 413 LNNQQRESAPLL--PRKRGRPPKKRQENAEIRNITPGLTDSSVHSSSATPQS 462


>SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor
           Vps902 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 741 SS*DVSTDDL*XK*MSLKNKXXLQNCXPPPDXQ 839
           +S D + DDL  K ++ + K  L NC P PD +
Sbjct: 135 TSTDAAKDDLLKKFIASEEKKELINCIPIPDDE 167


>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 242 VRQVVSYDEHEPVWHSHV 189
           +R+ V YDE EP+W S +
Sbjct: 436 IRECVRYDEDEPLWISEL 453


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 300 GVPQGSALSPLLFSLYINDI 359
           G+PQGS LS  L   Y+ D+
Sbjct: 703 GIPQGSILSSFLCHFYMEDL 722


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,507,807
Number of Sequences: 5004
Number of extensions: 76695
Number of successful extensions: 233
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)