Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_G16
(816 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 34 0.028
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 34 0.028
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 34 0.028
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 33 0.048
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 31 0.15
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 4.2
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 5.6
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch... 26 7.4
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 25 9.7
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 33.9 bits (74), Expect = 0.028
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +1
Query: 106 AVGIDLGTTYSCVGVFQH 159
++GIDLGTTYSCVG F +
Sbjct: 4 SIGIDLGTTYSCVGHFSN 21
Score = 33.5 bits (73), Expect = 0.037
Identities = 25/96 (26%), Positives = 31/96 (32%)
Frame = +2
Query: 155 STGKVXIIANDQGKXTXPSXXXFXXPXRXFRKCPQKXXGXNPXKQXXMPKVXLGXFFQNX 334
S +V IIANDQG T PS F R + NP K +G F +
Sbjct: 20 SNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHNTIFDAKRLIGRRFNDP 79
Query: 335 FXXXXXXXXXXRVXXWGAPPXRGXXXGGKKXFFPPE 442
+V P G+ F PE
Sbjct: 80 EVQSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPE 115
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 33.9 bits (74), Expect = 0.028
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +1
Query: 106 AVGIDLGTTYSCVGVFQH 159
++GIDLGTTYSCVG F +
Sbjct: 4 SIGIDLGTTYSCVGHFSN 21
Score = 33.9 bits (74), Expect = 0.028
Identities = 25/96 (26%), Positives = 31/96 (32%)
Frame = +2
Query: 155 STGKVXIIANDQGKXTXPSXXXFXXPXRXFRKCPQKXXGXNPXKQXXMPKVXLGXFFQNX 334
S +V IIANDQG T PS F R + NP K +G F +
Sbjct: 20 SNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHNTIFDAKRLIGRKFDDP 79
Query: 335 FXXXXXXXXXXRVXXWGAPPXRGXXXGGKKXFFPPE 442
+V P G+ F PE
Sbjct: 80 EVQSDMKHWPFKVISKDGKPVLQVEYKGETKTFTPE 115
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 33.9 bits (74), Expect = 0.028
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = +1
Query: 106 AVGIDLGTTYSCVGVFQ 156
A+GIDLGTTYSCV V++
Sbjct: 8 AIGIDLGTTYSCVAVWE 24
Score = 29.5 bits (63), Expect = 0.60
Identities = 17/58 (29%), Positives = 22/58 (37%)
Frame = +2
Query: 158 TGKVXIIANDQGKXTXPSXXXFXXPXRXFRKCPQKXXGXNPXKQXXMPKVXLGXFFQN 331
T V II NDQG T PS F R + NP K +G +++
Sbjct: 25 TANVEIIPNDQGARTTPSFVAFTETERLVGDAAKNQAAMNPRNTVFDAKRLIGRRYED 82
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 33.1 bits (72), Expect = 0.048
Identities = 22/85 (25%), Positives = 29/85 (34%)
Frame = +1
Query: 109 VGIDLGTTYSCVGVFQHXEGGXHRQRPGQXDXXVXXXVQXPRXXLSEMPPKTXXDXPPXT 288
+GIDLGTTYSCV V ++ G + E P T
Sbjct: 38 IGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFTEDERLVGEAAKNQAPSNPENT 97
Query: 289 XXDAQSXFGXFFPKXFXAXPXKTXP 363
D + G F + A K+ P
Sbjct: 98 IFDIKRLIGRKFDEKTMAKDIKSFP 122
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 31.5 bits (68), Expect = 0.15
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 97 KAPAVGIDLGTTYSCVGVFQ 156
K P +GIDLGTT SC+ + +
Sbjct: 49 KGPVIGIDLGTTTSCLAIME 68
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 4.2
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +3
Query: 702 PXPPXXXFXXXXXPPPPPXGG 764
P PP F PPPPP G
Sbjct: 11 PPPPPPGFEPPSQPPPPPPPG 31
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +3
Query: 702 PXPPXXXFXXXXXPPPPPXGGGG 770
P PP PPPPP G G
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAG 772
>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 563
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -1
Query: 120 IDSYCGCFXPFCIFNQSCYLFLKQLKQTCAI 28
++S PFCI + LF K L C I
Sbjct: 129 VESLANLLPPFCISQKIVNLFFKTLNVVCPI 159
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -3
Query: 175 DXHLPXAGRHQRKSTWYPDRF 113
D LP G+H WY DRF
Sbjct: 317 DSKLPEPGKHLFHLQWYHDRF 337
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,188,056
Number of Sequences: 5004
Number of extensions: 31882
Number of successful extensions: 66
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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