Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_G08
(834 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 95 1e-20
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 95 1e-20
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 34 0.022
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 32 0.087
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 30 0.35
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 27 3.3
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 3.3
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 4.3
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 27 4.3
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 26 5.7
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 94.7 bits (225), Expect = 1e-20
Identities = 39/51 (76%), Positives = 45/51 (88%)
Frame = +1
Query: 49 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHV 201
F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+
Sbjct: 6 FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHI 56
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 94.7 bits (225), Expect = 1e-20
Identities = 39/51 (76%), Positives = 45/51 (88%)
Frame = +1
Query: 49 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHV 201
F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+
Sbjct: 6 FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHI 56
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 34.3 bits (75), Expect = 0.022
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +2
Query: 488 PXPPXXXXXXXXPPPPPXXXXXXPPPPPP 574
P P PPPPP PPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 33.5 bits (73), Expect = 0.038
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +3
Query: 486 PPXPXXXXXXXXXPPPPXXXXXXXPPPPPPP 578
PP PPPP PPPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 33.1 bits (72), Expect = 0.050
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +3
Query: 486 PPXPXXXXXXXXXPPPPXXXXXXXPPPPPPP 578
PP P PPP PPPPPPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 31.1 bits (67), Expect = 0.20
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 524 PPPPPXXXXXXPPPPPPXXGG 586
PPP P PPPPPP G
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAG 772
Score = 30.7 bits (66), Expect = 0.27
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +2
Query: 524 PPPPPXXXXXXPPPPPPXXG 583
P PPP PPPPPP G
Sbjct: 750 PVPPPAPIMGGPPPPPPPPG 769
Score = 29.5 bits (63), Expect = 0.61
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +3
Query: 486 PPXPXXXXXXXXXPPPPXXXXXXXPPPPPPP 578
P P PPPP PPPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = +2
Query: 473 GGXXAPXPPXXXXXXXXPPPPPXXXXXXPPPPPPXXGG 586
GG P PP PPPP PPPP GG
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPP-------PPPPAVSAGG 789
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 32.3 bits (70), Expect = 0.087
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +3
Query: 525 PPPPXXXXXXXPPPPPPP 578
PPPP PPPPPPP
Sbjct: 13 PPPPGFEPPSQPPPPPPP 30
Score = 31.1 bits (67), Expect = 0.20
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +2
Query: 524 PPPPPXXXXXXPPPPPPXXG 583
PPPPP PPPPP G
Sbjct: 12 PPPPPGFEPPSQPPPPPPPG 31
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/19 (57%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
Frame = +2
Query: 524 PPPPPX--XXXXXPPPPPP 574
PPPPP PPPPPP
Sbjct: 11 PPPPPPGFEPPSQPPPPPP 29
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 30.3 bits (65), Expect = 0.35
Identities = 14/41 (34%), Positives = 14/41 (34%)
Frame = +3
Query: 453 PPXXXGGGGXXPPXPXXXXXXXXXPPPPXXXXXXXPPPPPP 575
PP G PP P PPPP PPPP
Sbjct: 210 PPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 250
Score = 30.3 bits (65), Expect = 0.35
Identities = 14/41 (34%), Positives = 14/41 (34%)
Frame = +3
Query: 453 PPXXXGGGGXXPPXPXXXXXXXXXPPPPXXXXXXXPPPPPP 575
PP G PP P PPPP PPPP
Sbjct: 223 PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 263
Score = 30.3 bits (65), Expect = 0.35
Identities = 14/41 (34%), Positives = 14/41 (34%)
Frame = +3
Query: 453 PPXXXGGGGXXPPXPXXXXXXXXXPPPPXXXXXXXPPPPPP 575
PP G PP P PPPP PPPP
Sbjct: 236 PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 276
Score = 30.3 bits (65), Expect = 0.35
Identities = 14/41 (34%), Positives = 14/41 (34%)
Frame = +3
Query: 453 PPXXXGGGGXXPPXPXXXXXXXXXPPPPXXXXXXXPPPPPP 575
PP G PP P PPPP PPPP
Sbjct: 249 PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 289
Score = 30.3 bits (65), Expect = 0.35
Identities = 14/41 (34%), Positives = 14/41 (34%)
Frame = +3
Query: 453 PPXXXGGGGXXPPXPXXXXXXXXXPPPPXXXXXXXPPPPPP 575
PP G PP P PPPP PPPP
Sbjct: 262 PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 302
Score = 30.3 bits (65), Expect = 0.35
Identities = 14/41 (34%), Positives = 14/41 (34%)
Frame = +3
Query: 453 PPXXXGGGGXXPPXPXXXXXXXXXPPPPXXXXXXXPPPPPP 575
PP G PP P PPPP PPPP
Sbjct: 275 PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 315
Score = 30.3 bits (65), Expect = 0.35
Identities = 14/41 (34%), Positives = 14/41 (34%)
Frame = +3
Query: 453 PPXXXGGGGXXPPXPXXXXXXXXXPPPPXXXXXXXPPPPPP 575
PP G PP P PPPP PPPP
Sbjct: 288 PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 328
Score = 30.3 bits (65), Expect = 0.35
Identities = 14/41 (34%), Positives = 14/41 (34%)
Frame = +3
Query: 453 PPXXXGGGGXXPPXPXXXXXXXXXPPPPXXXXXXXPPPPPP 575
PP G PP P PPPP PPPP
Sbjct: 301 PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 341
Score = 27.5 bits (58), Expect = 2.5
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = +3
Query: 474 GGXXPPXPXXXXXXXXXPPPPXXXXXXXPPPPPP 575
G PP P PPPP PPPP
Sbjct: 204 GEHMPPPPMHHKPGEHMPPPPMHHEPGEHMPPPP 237
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +1
Query: 37 RTENFQHPXH--GSMGFYPKKRSRRHRGKVKAFPKDDPSKPV 156
++E QHP +M FY + + G FP++ KP+
Sbjct: 186 KSEQVQHPQAVLDAMAFYSQSKKYLEEGAKPPFPRESTEKPL 227
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/42 (30%), Positives = 13/42 (30%)
Frame = +3
Query: 453 PPXXXGGGGXXPPXPXXXXXXXXXPPPPXXXXXXXPPPPPPP 578
P G PP P PPP PP PPP
Sbjct: 352 PLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393
Score = 26.6 bits (56), Expect = 4.3
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +2
Query: 488 PXPPXXXXXXXXPPPPPXXXXXXPPPPP 571
P PP P PP PPPPP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Score = 26.2 bits (55), Expect = 5.7
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +2
Query: 488 PXPPXXXXXXXXPPPPPXXXXXXPPPPPP 574
P PP P P PPPPPP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.6 bits (56), Expect = 4.3
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +2
Query: 488 PXPPXXXXXXXXPPPPPXXXXXXPPPPPP 574
P PP PP P PPPP P
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 26.2 bits (55), Expect = 5.7
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = +2
Query: 485 APXPPXXXXXXXXPPPPPXXXXXXPPPPPP 574
AP PP PP P P PPP
Sbjct: 1704 APTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 26.6 bits (56), Expect = 4.3
Identities = 11/31 (35%), Positives = 11/31 (35%)
Frame = +3
Query: 486 PPXPXXXXXXXXXPPPPXXXXXXXPPPPPPP 578
PP P PPPP P PP P
Sbjct: 731 PPTPAPTPAVKHHPPPPPVRSSISPSMPPAP 761
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = -1
Query: 585 PPXXGGGGGGXXXXXXGGGGGXXXXXXXXGGXG 487
P GGG GG G GGG GG G
Sbjct: 237 PGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHG 269
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,251,419
Number of Sequences: 5004
Number of extensions: 42564
Number of successful extensions: 389
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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