Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_G07
         (869 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   2.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.6  
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   8.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   8.0  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -2

Query: 439 GGXGAGGXXKXKP--RARXXGXPGVXCXPXLSSNQVRPPTSVPRTPA 305
           GG  AGG  K +   ++     P     P    +++RPPTS P  P+
Sbjct: 102 GGLFAGGMPKLRHIGKSSASAAPPSAPAPPTPQSELRPPTSAPPRPS 148


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 22/88 (25%), Positives = 27/88 (30%)
 Frame = +3

Query: 588 PXPXXXSGSPXSRGXXPPXGRPPXXGCXXXXRPXLXXAAXXXSXRXXGXXPPPXXLPXGP 767
           P P   S  P +    PP   PP         P L  +A        G    P   P  P
Sbjct: 416 PVPTPPSLPPSAPPSLPPSA-PPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAP 474

Query: 768 APXPRVSXRLXXXLXLRAXRPXXXGRGS 851
           AP P  +      +   A  P   GR +
Sbjct: 475 APPPAPAPAPAAPVASIAELPQQDGRAN 502


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = +2

Query: 737 SPSXXPPPXPRAXXPGXXAXXXGSXAAGXPPXP 835
           +P   PPP P    P       G   AG PP P
Sbjct: 747 APIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779


>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
 Frame = +1

Query: 118 LLATYDRDSPPDSKIVVNLTLHLRHANIRES-ESTVRIQADLQIELDRQTTE---LERRX 285
           ++ T +    PD K + +L L  R   +RE+ E+   +Q   Q   DR T+E   LE R 
Sbjct: 90  IVTTTNARIQPDEKTLQDL-LEQRQVALREAREAEEELQRARQYN-DRSTSEALELEARA 147

Query: 286 SGAAALGLVSSERLWEA 336
             AA    ++SER  EA
Sbjct: 148 KKAAQDAELASERAREA 164


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 18/72 (25%), Positives = 21/72 (29%)
 Frame = +1

Query: 652  PPXXGAPRXXGPASXLPXXXXPXGXQGVXPLPXASPXAPRHXPGXRGXSXRXXXCGPXAP 831
            P   GAP    P+   P    P G   V     A+P  P   P       +     P  P
Sbjct: 1115 PAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVP--APSGAPPVPKPSVAAPPVP 1172

Query: 832  XXXGGXXPXXXP 867
                G  P   P
Sbjct: 1173 APSSGIPPVPKP 1184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,148,476
Number of Sequences: 5004
Number of extensions: 33511
Number of successful extensions: 101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)