Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_G07
(869 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078 33 0.39
07_03_1136 + 24218601-24218734,24218769-24219906 32 0.52
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 26 1.1
06_03_1226 - 28541522-28541755,28543095-28543740,28544017-28545575 31 1.2
12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704... 30 2.8
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 29 4.8
06_01_0178 + 1386981-1387505 29 4.8
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 29 4.8
07_01_0633 - 4735298-4735485,4736083-4736114,4736203-4736297,473... 28 8.5
04_01_0530 - 6928528-6929500,6929514-6930964 28 8.5
>04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078
Length = 1034
Score = 32.7 bits (71), Expect = 0.39
Identities = 36/149 (24%), Positives = 43/149 (28%)
Frame = -2
Query: 781 RGXGAGPXGRXXGGGXXPXXLXEXXXAAXXRXGRXXXXHPXXGGRPXGGXXPRDXGEPEX 602
RG G G G GGG GR P GG GG + G
Sbjct: 10 RGRGRGRGGGRGGGGGDGRGGGYGGAGGGGVGGRGGRGPP--GG---GGGRGYEPGGGRG 64
Query: 601 XXGXGXRGXXXXLXXGXXXXXXGXPGXPXXXGGPXXRXGPTPXXXXXGRGXGPXGGXGAG 422
G G G G G GG G GRG GG G G
Sbjct: 65 YGGGGGGGGRGYGGGGGGGGYESGGGRGYGGGGRGYESGGGRGPGGGGRGHESGGGGGRG 124
Query: 421 GXXKXKPRARXXGXPGVXCXPXLSSNQVR 335
G +P G P P ++ +++
Sbjct: 125 GNVWAQPGRGRGGAPAPAPAPAPAARRIQ 153
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 32.3 bits (70), Expect = 0.52
Identities = 25/81 (30%), Positives = 25/81 (30%), Gaps = 2/81 (2%)
Frame = -2
Query: 655 GGRPXGGXXPRDXGEPEXXXGXGXRGXXXXLXXGXXXXXXGXPGXPXXXGGPXXRXGPTP 476
G RP G P G G G G G G P GG G P
Sbjct: 129 GARPPAPGGGGGGGAPRRVLGGGGGGGALARPPGGGRG--GALGRPPGGGGGGGGPGRAP 186
Query: 475 XXXXXGRGXG--PXGGXGAGG 419
G G G P GG G GG
Sbjct: 187 GGGGGGGGPGRAPGGGGGGGG 207
Score = 29.5 bits (63), Expect = 3.7
Identities = 40/138 (28%), Positives = 41/138 (29%), Gaps = 3/138 (2%)
Frame = -2
Query: 778 GXGAGPXGRXXGGGXXPXXLXEXXXAAXXRXGRXXXXHPXXGGRPXGGXXPRDXGEPEXX 599
G GA P G GGG P L G P GG GG PR
Sbjct: 103 GGGARPPG--GGGGGGPPSLPPGAGGG----GGARPPAPGGGG---GGGAPR-----RVL 148
Query: 598 XGXGXRGXXXXLXXGXXXXXXGXP-GXPXXXGGPXXRXGPTPXXXXXGRGXGPXGGXG-- 428
G G G G G P G GGP G GR G GG G
Sbjct: 149 GGGGGGGALARPPGGGRGGALGRPPGGGGGGGGPGRAPGGGGGGGGPGRAPGGGGGGGGL 208
Query: 427 AGGXXKXKPRARXXGXPG 374
GG + R G G
Sbjct: 209 GGGGGEGGAPERVIGGGG 226
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 25.8 bits (54), Expect(2) = 1.1
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +3
Query: 738 PPPXXLPXGPAPXP 779
PPP LP GP P P
Sbjct: 1183 PPPPPLPSGPPPQP 1196
Score = 23.8 bits (49), Expect(2) = 1.1
Identities = 15/60 (25%), Positives = 16/60 (26%)
Frame = +3
Query: 477 GVGPXRXXGPPXXXGXPGXPXXXXXXPXXRXXXXPRXPXPXXXSGSPXSRGXXPPXGRPP 656
G P PP G P P + P P P S PP PP
Sbjct: 1128 GPPPLPLDAPPPPPLPEGPPPLPSDSPPCQPPLPPSPPPATPPPPPPLSPSLPPPPPPPP 1187
>06_03_1226 - 28541522-28541755,28543095-28543740,28544017-28545575
Length = 812
Score = 31.1 bits (67), Expect = 1.2
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Frame = +1
Query: 55 CAIASAAECENATSLSLM--IDSLL-ATYDRDSPPDSKIVVNLTLHLRHANIRESESTVR 225
CA+ AEC+ +TS SL +D+L A YD D D L +R++ I + + +
Sbjct: 50 CAVLRDAECKQSTSHSLQEWLDNLKDAVYDIDDVLDDVSTEALEQEVRNSFIHRTRNMLT 109
Query: 226 IQADLQIELDRQTTELERRXSGAAALGL 309
L ++ +L+ + A GL
Sbjct: 110 YPFKLSQKIKEVRKKLDEIAANRAQFGL 137
>12_02_0118 -
13869237-13869307,13869375-13869465,13870321-13870440,
13870668-13870795,13871159-13871270,13871719-13871817,
13871918-13871992,13872099-13872320,13873177-13874034
Length = 591
Score = 29.9 bits (64), Expect = 2.8
Identities = 20/62 (32%), Positives = 22/62 (35%)
Frame = +3
Query: 594 PXXXSGSPXSRGXXPPXGRPPXXGCXXXXRPXLXXAAXXXSXRXXGXXPPPXXLPXGPAP 773
P G P + PP GRPP P L A + PPP P G AP
Sbjct: 162 PPPFGGPPVAAAQPPPFGRPPSAAAAGQSAP-LGGALFAAA------QPPPFGGPPGAAP 214
Query: 774 XP 779
P
Sbjct: 215 QP 216
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 29.1 bits (62), Expect = 4.8
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +1
Query: 94 SLSLMIDSLLATYDRDSPPDSKIVVNLTLHLRHANIRESESTVRIQADLQIELDRQTTE 270
+L +D L+ YD+ PPDS+ V HA+ E T I+ I L+R T E
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEAL--AAHAHATEGSETTAIRLLEVISLNRATPE 214
>06_01_0178 + 1386981-1387505
Length = 174
Score = 29.1 bits (62), Expect = 4.8
Identities = 22/73 (30%), Positives = 22/73 (30%)
Frame = -2
Query: 637 GXXPRDXGEPEXXXGXGXRGXXXXLXXGXXXXXXGXPGXPXXXGGPXXRXGPTPXXXXXG 458
G P D GEP G G G G G G GG G G
Sbjct: 7 GELPVD-GEPGQPGGRGRGGRGGRGGRGGASGGGGGGGGGGGGGGGGGAGGKGGKGGAGG 65
Query: 457 RGXGPXGGXGAGG 419
G GG G GG
Sbjct: 66 HGGAGGGGGGGGG 78
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = +1
Query: 652 PPXXGAPRXXGPASXLPXXXXPXGXQGVXPLPXASPXAPR 771
P APR GP P G G P P A P PR
Sbjct: 355 PAAPAAPRPPGPGPGPPPPPGAAGRGGGGPPPPALPGGPR 394
>07_01_0633 -
4735298-4735485,4736083-4736114,4736203-4736297,
4736414-4736487,4736682-4736817,4736902-4736965,
4737101-4737166,4737265-4737446,4737824-4737948,
4738031-4738169,4738250-4738369,4738675-4738746,
4738900-4738935,4739633-4739749,4739821-4739953,
4740053-4740156,4740243-4740370,4740880-4741010,
4741561-4741757,4743906-4744583
Length = 938
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -2
Query: 487 GPTPXXXXXGRGXGPXGGXGAGGXXKXKPRARXXGXPG 374
G P GRG GP GG G GG P+ + PG
Sbjct: 13 GRGPLGGRDGRGRGPAGGRG-GGRGGGHPQQQQQQQPG 49
>04_01_0530 - 6928528-6929500,6929514-6930964
Length = 807
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +3
Query: 42 VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 182
+SP+LCY+ C RK+ +L+ + SGLPP++ S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,607,663
Number of Sequences: 37544
Number of extensions: 367623
Number of successful extensions: 1411
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1368
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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