Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_G07
(869 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.39
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.39
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.39
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.39
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.39
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.39
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 26 0.39
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 26 0.39
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 24 2.1
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 23 3.7
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 23 4.8
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 23 4.8
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 23 4.8
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 23 4.8
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 23 4.8
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 8.5
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 8.5
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 26.2 bits (55), Expect = 0.39
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +2
Query: 242 KLNWIDKRLSWNAGXV-GLQHLGWCPRNACGRPDLV 346
KL W+D L WN G++ L P N +PD++
Sbjct: 40 KLEWVDYNLQWNESEYGGVKDLRITP-NKLWKPDIL 74
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 26.2 bits (55), Expect = 0.39
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +2
Query: 242 KLNWIDKRLSWNAGXV-GLQHLGWCPRNACGRPDLV 346
KL W+D L WN G++ L P N +PD++
Sbjct: 40 KLEWVDYNLQWNESEYGGVKDLRITP-NKLWKPDIL 74
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 26.2 bits (55), Expect = 0.39
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +2
Query: 242 KLNWIDKRLSWNAGXV-GLQHLGWCPRNACGRPDLV 346
KL W+D L WN G++ L P N +PD++
Sbjct: 40 KLEWVDYNLQWNESEYGGVKDLRITP-NKLWKPDIL 74
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 26.2 bits (55), Expect = 0.39
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +2
Query: 242 KLNWIDKRLSWNAGXV-GLQHLGWCPRNACGRPDLV 346
KL W+D L WN G++ L P N +PD++
Sbjct: 40 KLEWVDYNLQWNESEYGGVKDLRITP-NKLWKPDIL 74
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 26.2 bits (55), Expect = 0.39
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +2
Query: 242 KLNWIDKRLSWNAGXV-GLQHLGWCPRNACGRPDLV 346
KL W+D L WN G++ L P N +PD++
Sbjct: 40 KLEWVDYNLQWNESEYGGVKDLRITP-NKLWKPDIL 74
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 26.2 bits (55), Expect = 0.39
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +2
Query: 242 KLNWIDKRLSWNAGXV-GLQHLGWCPRNACGRPDLV 346
KL W+D L WN G++ L P N +PD++
Sbjct: 40 KLEWVDYNLQWNESEYGGVKDLRITP-NKLWKPDIL 74
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 26.2 bits (55), Expect = 0.39
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +2
Query: 242 KLNWIDKRLSWNAGXV-GLQHLGWCPRNACGRPDLV 346
KL W+D L WN G++ L P N +PD++
Sbjct: 108 KLEWVDYNLQWNESEYGGVKDLRITP-NKLWKPDIL 142
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 26.2 bits (55), Expect = 0.39
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +2
Query: 242 KLNWIDKRLSWNAGXV-GLQHLGWCPRNACGRPDLV 346
KL W+D L WN G++ L P N +PD++
Sbjct: 108 KLEWVDYNLQWNESEYGGVKDLRITP-NKLWKPDIL 142
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 23.8 bits (49), Expect = 2.1
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +2
Query: 248 NWIDKRLSWNAGXVGLQHLGWCPRNACGRPDLV 346
+W D +L W+ G + P + RPD+V
Sbjct: 80 SWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIV 112
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 23.0 bits (47), Expect = 3.7
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = +2
Query: 251 WIDKRLSWNAGXVGLQHLGWCPRNACGRPDLV 346
W D +L WN G + + P PD+V
Sbjct: 90 WNDYKLKWNPEEYGGVEMLYVPSENIWLPDIV 121
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 22.6 bits (46), Expect = 4.8
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +2
Query: 239 FKLNWIDKRLSWNAGXVGLQHLGWCPRNACGRPDL 343
F+ W+D+RL +N L++L + PDL
Sbjct: 86 FREQWLDERLRFNDFGGRLKYLTLTDASRVWMPDL 120
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 22.6 bits (46), Expect = 4.8
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +2
Query: 239 FKLNWIDKRLSWNAGXVGLQHLGWCPRNACGRPDL 343
F+ W+D+RL +N L++L + PDL
Sbjct: 86 FREQWLDERLRFNDFGGRLKYLTLTDASRVWMPDL 120
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 22.6 bits (46), Expect = 4.8
Identities = 6/15 (40%), Positives = 12/15 (80%)
Frame = +2
Query: 239 FKLNWIDKRLSWNAG 283
F+ +W+D+RL++ G
Sbjct: 57 FRQSWVDRRLAFQGG 71
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.6 bits (46), Expect = 4.8
Identities = 10/33 (30%), Positives = 15/33 (45%)
Frame = +2
Query: 248 NWIDKRLSWNAGXVGLQHLGWCPRNACGRPDLV 346
+W D +L W G + P + RPD+V
Sbjct: 84 SWYDYKLRWEPKEYGGVKMLHVPSDHIWRPDIV 116
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.6 bits (46), Expect = 4.8
Identities = 10/33 (30%), Positives = 15/33 (45%)
Frame = +2
Query: 248 NWIDKRLSWNAGXVGLQHLGWCPRNACGRPDLV 346
+W D +L W G + P + RPD+V
Sbjct: 84 SWYDYKLRWEPKEYGGVKMLHVPSDHIWRPDIV 116
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 21.8 bits (44), Expect = 8.5
Identities = 10/35 (28%), Positives = 15/35 (42%)
Frame = +2
Query: 242 KLNWIDKRLSWNAGXVGLQHLGWCPRNACGRPDLV 346
KL W D + WN G P + +PD++
Sbjct: 77 KLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVL 111
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.8 bits (44), Expect = 8.5
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = +3
Query: 609 GSPXSRGXXPPXGRPP 656
GSP + PP G PP
Sbjct: 37 GSPPNPSQGPPPGGPP 52
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,853
Number of Sequences: 438
Number of extensions: 3200
Number of successful extensions: 18
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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