Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_G06
         (827 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...   265   3e-71
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327...   262   2e-70
01_06_0083 + 26283492-26283756,26284255-26284467,26284620-262847...    31   1.1  
05_04_0324 - 20273797-20274261                                         29   4.5  

>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score =  265 bits (650), Expect = 3e-71
 Identities = 118/199 (59%), Positives = 154/199 (77%), Gaps = 1/199 (0%)
 Frame = +2

Query: 50  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 229
           F+HP HGS+GF P+KRS RHRGKVK+FPKDD SKP HLT+F+GYKAGMTH+VRE ++PGS
Sbjct: 6   FEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREVEKPGS 65

Query: 230 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 409
           K++KKE  EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYKNW   
Sbjct: 66  KLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKS 125

Query: 410 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAHIMEIQ 586
                      +  + G+K I+   +KM +Y S+VRVIAHTQ++ +K  +QKKAH+MEIQ
Sbjct: 126 KKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAHLMEIQ 185

Query: 587 LNGGTIEDKVKWXREHLEE 643
           +NGGTI DKV +  +  E+
Sbjct: 186 INGGTIADKVDYGYKFFEK 204



 Score = 54.8 bits (126), Expect = 8e-08
 Identities = 24/49 (48%), Positives = 32/49 (65%)
 Frame = +3

Query: 636 WKKPXPVDSVFXQXEMIDCIGVXXGXXYKXVTSRWXPXXLPRXKHKGLK 782
           ++K  PVD+VF + EMID IGV  G  Y+ V +RW    LPR  H+GL+
Sbjct: 202 FEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLR 250


>11_01_0427 +
           3274817-3274901,3275587-3275697,3275979-3276283,
           3276406-3276815,3276942-3277200
          Length = 389

 Score =  262 bits (643), Expect = 2e-70
 Identities = 117/199 (58%), Positives = 153/199 (76%), Gaps = 1/199 (0%)
 Frame = +2

Query: 50  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 229
           F+HP HGS+GF P+KRS RHRGKVK+FPKDD +KP HLT+F+GYKAGMTH+VRE ++PGS
Sbjct: 6   FEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREVEKPGS 65

Query: 230 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 409
           K++KKE  EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYKNW   
Sbjct: 66  KLHKKETCEAVTIIETPPIVVVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKS 125

Query: 410 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAHIMEIQ 586
                      +  + G+K I+   +KM +Y SVVRVI HTQ++ +K  +QKKAH+MEIQ
Sbjct: 126 KKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASVVRVIVHTQIRKMKGLKQKKAHLMEIQ 185

Query: 587 LNGGTIEDKVKWXREHLEE 643
           +NGGTI DKV +  +  E+
Sbjct: 186 INGGTIADKVDYGYKFFEK 204



 Score = 54.8 bits (126), Expect = 8e-08
 Identities = 24/49 (48%), Positives = 32/49 (65%)
 Frame = +3

Query: 636 WKKPXPVDSVFXQXEMIDCIGVXXGXXYKXVTSRWXPXXLPRXKHKGLK 782
           ++K  PVD+VF + EMID IGV  G  Y+ V +RW    LPR  H+GL+
Sbjct: 202 FEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLR 250


>01_06_0083 +
           26283492-26283756,26284255-26284467,26284620-26284771,
           26284884-26285157,26285277-26285485
          Length = 370

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 469 NRKRFQEDDPLL*CCKSHCPHSNEAVKTATKEGSHYGNP 585
           N +RF  +DPLL CC  H P+   A  T  +  + +G+P
Sbjct: 297 NPRRFGINDPLLACCGGHGPYHTGA--TCDRTATVWGDP 333


>05_04_0324 - 20273797-20274261
          Length = 154

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +2

Query: 128 FPKDDPSKPVHLTAFIGYKAGMTHVVRE--PDRPGSKINKKEIVEAVTIIETPPMVCVGV 301
           FP D+P K VH+    G  + +T ++ E  P +    +N     EA   +  P   CVGV
Sbjct: 60  FPPDNPQKFVHVHRVFG-ASNVTKLLNELHPYQREDAVNSL-AYEADMRLRDPVYGCVGV 117

Query: 302 VGYIETPHGLRAL 340
           +  ++  H LR L
Sbjct: 118 ISVLQ--HQLRQL 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,694,335
Number of Sequences: 37544
Number of extensions: 444482
Number of successful extensions: 988
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)