Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_F24
         (829 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0341 - 29398221-29398345,29398757-29398811,29398904-293989...    65   6e-11
09_02_0076 - 3959572-3960279                                           30   2.6  
04_04_0090 - 22747049-22747282,22747438-22747847,22748562-227487...    29   4.5  
08_02_0073 + 11919938-11920060,11922325-11922939                       29   6.0  
08_02_0034 - 11435678-11435702,11435787-11435816,11436364-114365...    29   6.0  
04_03_0052 + 10257109-10257337,10257580-10257668,10257708-102582...    29   6.0  
01_01_0996 - 7879154-7880117,7881280-7881395                           29   6.0  

>05_07_0341 -
           29398221-29398345,29398757-29398811,29398904-29398981,
           29399063-29399154,29399237-29399260,29399353-29399471,
           29399839-29399908,29399985-29400051,29400145-29400219,
           29400313-29400351,29400735-29400827,29401611-29401634
          Length = 286

 Score = 65.3 bits (152), Expect = 6e-11
 Identities = 38/107 (35%), Positives = 55/107 (51%)
 Frame = +1

Query: 187 EFRAGRMTLKGRMVHPDKRKGLLYVYQGEDSLMHFCWKDRTTGEVEDDLLIFPDDCEFTR 366
           EFRAG+M+L G  V PD RKGL+ +  G D +                  +FP++  F +
Sbjct: 13  EFRAGKMSLDGTRVIPDTRKGLVRI--GRDQI------------------VFPEEAVFEK 52

Query: 367 VNECTTGRVYVXXXXXXXXXXXXWMQEPKADKDEEYCRRINEALNNP 507
           V + ++GRVY+            WMQEP AD D + CR++N  +N P
Sbjct: 53  VTQ-SSGRVYILKFRHDSRKFFFWMQEPSADDDSQICRQVNAYINRP 98


>09_02_0076 - 3959572-3960279
          Length = 235

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 17/44 (38%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
 Frame = -2

Query: 432 EALLRKQLELEYINSACGAFIHTRKFTIIRKYK-QVILNLPRSS 304
           EA+L++  + +++NS    F+ TRK T+++KYK +V+++ PR+S
Sbjct: 49  EAMLQQARD-QFLNS----FMQTRKGTLVQKYKIKVVVDDPRTS 87


>04_04_0090 -
           22747049-22747282,22747438-22747847,22748562-22748757,
           22749511-22749583,22749673-22749753,22749855-22749940,
           22750050-22750126,22750313-22750409,22751025-22752020,
           22752882-22752926
          Length = 764

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 129 TVWQYVWSWGKFRRKQTHSRISCWSYDVERSYGTSRQK 242
           TVW   W W +F  ++   R   W   ++ SY  +R++
Sbjct: 666 TVWARHWYWKRFAPQEQLKRSERWKDSIDFSYVRARRR 703


>08_02_0073 + 11919938-11920060,11922325-11922939
          Length = 245

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = -2

Query: 465 ILVSLWLLHPEEALLRKQLELEYINSACGAFIHTRKFTIIRKYKQVIL 322
           +L++L  L PE+    + +  +  N    +F  TRK T+++KYK  ++
Sbjct: 74  VLITLDKLTPEQQKDLEAMMQQARNQFLSSFTETRKGTLVQKYKVKVI 121


>08_02_0034 -
           11435678-11435702,11435787-11435816,11436364-11436501,
           11436646-11436755,11436838-11436867,11437948-11437993,
           11438453-11438622,11439156-11439221,11439299-11439378,
           11440704-11440842,11440933-11441013,11441112-11441147,
           11441414-11441539,11442084-11442179,11443615-11443689,
           11444288-11444434,11445155-11445229,11445485-11445619,
           11445706-11445834,11446161-11446292,11446395-11446598
          Length = 689

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 659 PHVPKREVIPPTGPTPPNNCISCC 588
           PH      + P+ PTPP++ +SCC
Sbjct: 22  PHRRPGLALRPSPPTPPSSSLSCC 45


>04_03_0052 +
           10257109-10257337,10257580-10257668,10257708-10258289,
           10258477-10258668,10259392-10259563,10260190-10260461,
           10260682-10260801,10260912-10260968,10261631-10261831,
           10262451-10262511,10262712-10263013
          Length = 758

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/39 (35%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
 Frame = -2

Query: 426 LLRKQLELEYINSACGAFIHTRKFTIIRKYK-QVILNLP 313
           L+R+Q + + +NS    F+ TRK T+++KYK +++ ++P
Sbjct: 671 LMRQQTQHQLLNS----FMETRKGTVVQKYKVKLVADVP 705


>01_01_0996 - 7879154-7880117,7881280-7881395
          Length = 359

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 237 VWMYHTTFQRHTTSTKFYYVFVSS*TSPKTRRIAKQC 127
           +W +H T  R+ ++  +  +  SS T P  RRIA  C
Sbjct: 15  LWEFHATGPRNISNPSWRDLIRSSWTDPNYRRIAVSC 51


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,317,217
Number of Sequences: 37544
Number of extensions: 339852
Number of successful extensions: 898
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)