Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_F22
         (849 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    33   0.22 
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863...    30   2.0  
01_01_0083 + 631196-631675                                             30   2.0  
01_03_0005 + 11568545-11569119,11569179-11569191                       29   3.5  
09_04_0258 - 16175258-16176069,16176111-16176414                       29   6.2  

>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 17/54 (31%), Positives = 19/54 (35%)
 Frame = +3

Query: 495  APXXXPXGXGXXXPPPPPXXISXTPXXXPRXGXGXXXXPSPXXVXXXXXGXRSP 656
            AP     G G   PPPPP  I+  P   P  G G    P    +     G   P
Sbjct: 1098 APPPPSIGAGAPPPPPPPGGITGVPPPPPIGGLGGHQAPPAPPLPEGIGGVPPP 1151



 Score = 28.7 bits (61), Expect = 6.2
 Identities = 18/56 (32%), Positives = 18/56 (32%)
 Frame = +1

Query: 451  PPPXGGGGXXXFXFXXRXAXPGXGGGXXPPPPXXXYXXLPXRXPXGAXXXXXXPPP 618
            PPP   GG            P   GG  PPPP       P   P  A      PPP
Sbjct: 1122 PPPPPIGGLGGHQAPPAPPLPEGIGGVPPPPPVGGLGG-PPAPPPPAGFRGGTPPP 1176


>03_02_0455 -
           8630543-8630893,8630994-8631068,8631149-8631223,
           8631332-8631397,8631891-8631967,8632659-8633070
          Length = 351

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 18/54 (33%), Positives = 19/54 (35%)
 Frame = +2

Query: 509 PXGXGXGXPPPPPXXXIXXSRXXSPXGRRXXXXXLPXXRPXXXXGXTQPPRXPP 670
           P G G G P PPP           P         +P   P    G TQPP  PP
Sbjct: 258 PNGSG-GPPRPPPPQVPPPPPQAPPPPPPNAPMGMPPRIPPPPVGGTQPPPPPP 310


>01_01_0083 + 631196-631675
          Length = 159

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
 Frame = +1

Query: 451 PPPXGGGGXXXFXFXXRXAXPGXGGG---XXPPPP 546
           PPP GGGG     +       G GGG     PPPP
Sbjct: 78  PPPQGGGGGYIPYYQPPAGGGGGGGGFNYPAPPPP 112


>01_03_0005 + 11568545-11569119,11569179-11569191
          Length = 195

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +1

Query: 442 VFXPPPXGGGGXXXFXFXXRXAXPGXGGGXXPPPP 546
           ++ PPP GGGG     +       G GGG  P PP
Sbjct: 111 IYYPPPTGGGGGGGGGW----QQGGGGGGAYPTPP 141



 Score = 29.1 bits (62), Expect = 4.7
 Identities = 17/53 (32%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
 Frame = -2

Query: 617 GGGXXXXXXAPXGXRXGSXXYXXXGGGGXXP-PPXPGXAXRXXKXKXXXPPPP 462
           GGG         G   G       GGGG  P PP P             PPPP
Sbjct: 108 GGGIYYPPPTGGGGGGGGGWQQGGGGGGAYPTPPPPNPFLPYFPFYYYSPPPP 160


>09_04_0258 - 16175258-16176069,16176111-16176414
          Length = 371

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 15/39 (38%), Positives = 16/39 (41%)
 Frame = -2

Query: 542 GGGXXPPPXPGXAXRXXKXKXXXPPPPXGGGXKTXXGXG 426
           GGG  PPP P       +     PPPP GG      G G
Sbjct: 218 GGGASPPPLP------VRVGASTPPPPHGGAGLPEVGGG 250


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,785,903
Number of Sequences: 37544
Number of extensions: 336890
Number of successful extensions: 1588
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1349
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)