Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_F22
(849 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 33 0.34
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 33 0.34
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 32 0.59
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 32 0.59
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 4.2
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 4.2
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 4.2
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 32.7 bits (71), Expect = 0.34
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = -2
Query: 617 GGGXXXXXXAPXGXRXGSXXYXXXGGGGXXPPPXP 513
GGG AP G G GGGG PPP P
Sbjct: 44 GGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAP 78
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 32.7 bits (71), Expect = 0.34
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = -2
Query: 617 GGGXXXXXXAPXGXRXGSXXYXXXGGGGXXPPPXP 513
GGG AP G G GGGG PPP P
Sbjct: 44 GGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAP 78
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.9 bits (69), Expect = 0.59
Identities = 22/69 (31%), Positives = 22/69 (31%), Gaps = 5/69 (7%)
Frame = +1
Query: 427 PXPXXVFXPPPXGGGGXXXFXFXXRXAXPGXGGGXXPPPPXXXY-----XXLPXRXPXGA 591
P P P P G G R PG GG PPPP Y P R P
Sbjct: 300 PPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAG 359
Query: 592 XXXXXXPPP 618
PPP
Sbjct: 360 PGMYPPPPP 368
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.9 bits (69), Expect = 0.59
Identities = 22/69 (31%), Positives = 22/69 (31%), Gaps = 5/69 (7%)
Frame = +1
Query: 427 PXPXXVFXPPPXGGGGXXXFXFXXRXAXPGXGGGXXPPPPXXXY-----XXLPXRXPXGA 591
P P P P G G R PG GG PPPP Y P R P
Sbjct: 310 PPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAG 369
Query: 592 XXXXXXPPP 618
PPP
Sbjct: 370 PGMYPPPPP 378
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = -2
Query: 539 GGXXPPPXPGXAXRXXKXKXXXPPPPXG 456
GG PPP PG PPPP G
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPPPPPGG 767
Score = 27.9 bits (59), Expect = 9.6
Identities = 19/61 (31%), Positives = 19/61 (31%), Gaps = 5/61 (8%)
Frame = +1
Query: 451 PPPXGGGGXXXFXFXXRXAXPGX-----GGGXXPPPPXXXYXXLPXRXPXGAXXXXXXPP 615
PPP GG PG GG PPPP P P G PP
Sbjct: 728 PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 787
Query: 616 P 618
P
Sbjct: 788 P 788
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = -2
Query: 539 GGXXPPPXPGXAXRXXKXKXXXPPPPXG 456
GG PPP PG PPPP G
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPPPPPGG 767
Score = 27.9 bits (59), Expect = 9.6
Identities = 19/61 (31%), Positives = 19/61 (31%), Gaps = 5/61 (8%)
Frame = +1
Query: 451 PPPXGGGGXXXFXFXXRXAXPGX-----GGGXXPPPPXXXYXXLPXRXPXGAXXXXXXPP 615
PPP GG PG GG PPPP P P G PP
Sbjct: 728 PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 787
Query: 616 P 618
P
Sbjct: 788 P 788
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = -2
Query: 539 GGXXPPPXPGXAXRXXKXKXXXPPPPXG 456
GG PPP PG PPPP G
Sbjct: 323 GGPPPPPPPGGLPPISGGPPPPPPPPGG 350
Score = 27.9 bits (59), Expect = 9.6
Identities = 19/61 (31%), Positives = 19/61 (31%), Gaps = 5/61 (8%)
Frame = +1
Query: 451 PPPXGGGGXXXFXFXXRXAXPGX-----GGGXXPPPPXXXYXXLPXRXPXGAXXXXXXPP 615
PPP GG PG GG PPPP P P G PP
Sbjct: 311 PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 370
Query: 616 P 618
P
Sbjct: 371 P 371
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,685,146
Number of Sequences: 27780
Number of extensions: 180253
Number of successful extensions: 925
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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