Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_F21
         (853 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    30   0.48 
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    28   1.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.4  
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...    27   4.5  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    26   5.9  
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    26   7.8  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +2

Query: 341 VRVHRADTGRSSNELDRQTTELERR 415
           +R H+   GR+  ELDR+ T+L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
 Frame = -1

Query: 145 FMTTDLLKLSRV-NLK-HHIVD--PFCSRPPNPLPFETPSRPT 29
           F  TD  + S++ N++   ++D  PF + PP PLP   P  PT
Sbjct: 778 FSITDTKRFSKIENMRIKEVIDGNPFKAPPPAPLPPPAPPLPT 820


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +1

Query: 745 PXXCPXRDPXXVEXPPXPXPXGPPGXXPXPP 837
           P   P   P     PP P P G  G  P PP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778


>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 145 FMTTDLLKLSRVNLKHHIVDPFCSR 71
           F T+DLL++  V  +H  +DPF SR
Sbjct: 713 FDTSDLLEIISVLSEHPQIDPFSSR 737


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 410 VPTQSFVDPIHLKICQYPHGGL 345
           +P Q+F    H+++C YP GG+
Sbjct: 153 IPQQNFT---HVRLCMYPDGGI 171


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 162 LFCYXFLLTCAIASAAECENATSLSLMIDSLLATYDRE 275
           LFC   + T  + S  EC N     +++D+L   Y ++
Sbjct: 301 LFCEECIQTALLDSDFECPNCHRKDVLLDTLNPDYQKQ 338


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,064,991
Number of Sequences: 5004
Number of extensions: 57325
Number of successful extensions: 178
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)