Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_F21
(853 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 30 2.7
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 29 3.6
04_01_0159 - 1824343-1824405,1824485-1824595,1825282-1825448,182... 29 3.6
11_04_0415 - 17395988-17396161,17397349-17397444,17397489-173980... 29 4.7
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 29 6.2
01_06_1678 - 39095986-39096205,39096400-39096477,39096578-390969... 29 6.2
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 28 8.2
07_03_1747 + 29188568-29188715,29188793-29189541 28 8.2
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 28 8.2
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365... 28 8.2
04_03_1027 - 21820843-21820878,21820974-21821117,21821220-218213... 28 8.2
02_05_0822 + 32025992-32026696,32027237-32027314,32027547-320277... 28 8.2
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 8.2
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 29.9 bits (64), Expect = 2.7
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +1
Query: 757 PXRDPXXVEXPPXPXPXGPPGXXPXPP 837
P P PP P P G PG P PP
Sbjct: 614 PPPPPRPPGAPPPPPPPGKPGGPPPPP 640
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 356 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 267
+GG L ++Q G Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129
>04_01_0159 -
1824343-1824405,1824485-1824595,1825282-1825448,
1825853-1826029,1826404-1826656
Length = 256
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -2
Query: 528 TGAESVVPGGGCSRV*QYHVRPPQAFRGHQPSAAAPFPLRSNSVVCRSNS 379
T + S GGCS + PP AFRG+ + P + V CR+ S
Sbjct: 59 TASASASASGGCSPAPPWAPSPP-AFRGNVKARYQPVMFNGSIVYCRTPS 107
>11_04_0415 -
17395988-17396161,17397349-17397444,17397489-17398026,
17398106-17398422
Length = 374
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -3
Query: 836 GGXGXXPGGPXGXGXGGXSTXXGSRXGHXXGQIG 735
G G GGP G G GG GS+ G++G
Sbjct: 31 GPRGFGGGGPRGFGGGGPRGFGGSKPRRGNGELG 64
>11_01_0035 -
256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 28.7 bits (61), Expect = 6.2
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 787 PPXPXPXGPPGXXPXPP 837
PP P P G PG P PP
Sbjct: 929 PPPPPPPGKPGGPPPPP 945
>01_06_1678 -
39095986-39096205,39096400-39096477,39096578-39096949,
39097374-39097671,39097867-39098077,39098331-39099023
Length = 623
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +1
Query: 742 CPXXCPXRDPXXVEXPPXPXPXGPPGXXPXPP 837
CP P P P P P PP P PP
Sbjct: 115 CPPRPPPPPPPHPPEDPPPHPPHPPDHPPPPP 146
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 341 VRVHRADTGRSSNELDRQTTELERRG 418
V+ H + R S EL+RQ ELER+G
Sbjct: 89 VQRHGEELERQSRELERQREELERQG 114
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 28.3 bits (60), Expect = 8.2
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +2
Query: 497 PPPGTTLSAPVYLITAPSPX*SAWTLXLQFLCS*TIGPTTCTLARS 634
PPP TT++ V L TA + S + QF+C+ TTC + S
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSES 255
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +3
Query: 228 SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMN 383
+L +D L+ YD+ PPDS+ V HA + +R+L + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209
>05_01_0004 -
34967-35149,35340-35501,36078-36225,36309-36385,
36507-36577,36850-37263,37518-38268
Length = 601
Score = 28.3 bits (60), Expect = 8.2
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +1
Query: 757 PXRDPXXVEXPPXPXPXGPPGXXPXPP 837
P P PP P P PP P PP
Sbjct: 67 PSATPPLAASPPPPPPPPPPRNSPSPP 93
>04_03_1027 -
21820843-21820878,21820974-21821117,21821220-21821358,
21821522-21821652,21823615-21823670,21823964-21824258
Length = 266
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -1
Query: 517 ERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPIPPAFQLSRLSIQFI 377
E + R W + RLA+ ++ V R K P+PP L+ L++ +
Sbjct: 47 EAAKRGWSEIRLAIEELSAVDVERRGGKPPPPLPPPPTLTFLALSHL 93
>02_05_0822 +
32025992-32026696,32027237-32027314,32027547-32027713,
32027811-32027885,32028624-32028742,32028908-32029204,
32029275-32029362,32029467-32029572,32029727-32029837,
32030520-32030683,32031237-32031357,32031958-32032182,
32032267-32032457,32032658-32032825,32032911-32033016,
32033301-32033438,32033533-32033697,32033777-32033980,
32034341-32034535,32034603-32034674,32034797-32034949
Length = 1215
Score = 28.3 bits (60), Expect = 8.2
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -2
Query: 465 PPQAFR-GHQPSAAAPFPLRSNSVVCRSNS 379
PP+ FR GH P AAAP PLR++ S S
Sbjct: 32 PPEKFRSGHLPRAAAP-PLRTDDGSVASGS 60
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 526 GRGERSPRRWLQPRLAVPRQASTSVPRTP 440
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,765,536
Number of Sequences: 37544
Number of extensions: 542001
Number of successful extensions: 2379
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2265
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -