Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_F20
(795 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0894 + 7047273-7048277,7049124-7049549 35 0.086
07_03_1231 + 25047067-25047262,25047876-25048045,25048897-250490... 28 7.4
01_01_0094 - 730484-731570,732030-732715 28 7.4
12_01_0258 - 1900564-1901101,1901838-1902004 28 9.8
11_01_0489 + 3776563-3776692,3776995-3777073,3777532-3777840,377... 28 9.8
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389... 28 9.8
05_02_0003 + 5520331-5520476,5520572-5520644,5520762-5520928,552... 28 9.8
03_05_1022 - 29756127-29756198,29756335-29756421,29756783-297569... 28 9.8
01_06_1087 - 34430521-34430899,34432336-34432806,34432926-344331... 28 9.8
>01_01_0894 + 7047273-7048277,7049124-7049549
Length = 476
Score = 34.7 bits (76), Expect = 0.086
Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Frame = -1
Query: 630 GFRLPWPPSCCHERPTPFMVSHERFLGALTLRLVHPTA----PVLLTKIGPLGTVIRSPA 463
G+RLP PPS R PF+ H LG+L R + A PV+L G + TV+ S A
Sbjct: 43 GWRLPLPPS---PRGVPFL-GHLPLLGSLPHRKLRSMAEAHGPVMLLWFGRVPTVVASSA 98
Query: 462 SSFE*AGVLTHLKFENRLR 406
+S + A F +R R
Sbjct: 99 ASAQEAMRARDAAFASRAR 117
>07_03_1231 +
25047067-25047262,25047876-25048045,25048897-25049030,
25049122-25049369,25049799-25049904,25049992-25050130,
25050258-25050385,25050472-25050733
Length = 460
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -2
Query: 506 LPKLAHLAPSSDLRLHRSSKPEFSPI 429
L L +LAP DLR+ SSKP F I
Sbjct: 259 LETLVNLAPVLDLRIFSSSKPSFIKI 284
>01_01_0094 - 730484-731570,732030-732715
Length = 590
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 636 LSGFRLPWPPSCCHERPTPFMVSHERFLGALT 541
+ G +LP P C + P P +V RF LT
Sbjct: 552 VDGLQLPSRPFFCDDEPLPLLVDSYRFSSELT 583
>12_01_0258 - 1900564-1901101,1901838-1902004
Length = 234
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = +1
Query: 595 MTAGRWPWKSESAKECATTHLPKQPALKMDGAETVFAYTLPLP 723
M + RW WK+E+A E + M G A +P P
Sbjct: 21 MASARWRWKAEAAHERRAAERDAMDGMGMGGTREAGADHVPEP 63
>11_01_0489 +
3776563-3776692,3776995-3777073,3777532-3777840,
3778828-3778898,3778975-3779213,3779306-3779383,
3779734-3780156,3780416-3780661,3780886-3780978,
3781480-3781527
Length = 571
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 245 KSIVGTGYRGERLIEPSSSWFRPKFPSG 328
+ + GTG + PSS+WF P+ SG
Sbjct: 12 RCVFGTGPLPPASLSPSSAWFDPELSSG 39
>06_03_0099 +
16633928-16638213,16638299-16638386,16638823-16638950,
16640008-16640278
Length = 1590
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Frame = -1
Query: 672 GWLLRQVSRCTLLSGFRL---PWPPSCCHER 589
G+LLR + LLS RL P PP CCH R
Sbjct: 63 GYLLRHSAHFLLLSA-RLRPPPPPPRCCHRR 92
>05_02_0003 +
5520331-5520476,5520572-5520644,5520762-5520928,
5520929-5521223,5521531-5521674,5521756-5521890,
5522004-5522093,5523702-5523809,5523905-5523986,
5525362-5525417,5525888-5525986,5526090-5526394,
5526898-5527075,5527167-5527280,5527376-5527507,
5527614-5527718
Length = 742
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +2
Query: 509 RTGAVG*TKRSVKAPKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVQRLTCRSNQP 673
+TG G KR +KA +K S+D + R QQ G + + + ++Q+ +S P
Sbjct: 267 KTGDFG--KRPIKAMEKLSYDAICSGARCIQQQGNNSNMSRSDALQQYHSKSFNP 319
>03_05_1022 -
29756127-29756198,29756335-29756421,29756783-29756968,
29757088-29757188,29757379-29757484,29757564-29757638,
29757772-29757903,29771476-29771655,29772032-29772234,
29773296-29773602
Length = 482
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 262 SSDDRFARQNRYGPPSGFXPDFDLTR 185
S+ ++F ++ RY GF PD DL R
Sbjct: 292 STKEKFLKKFRYAVSPGFDPDIDLER 317
>01_06_1087 -
34430521-34430899,34432336-34432806,34432926-34433112,
34433470-34433599,34433794-34434125,34434566-34435050,
34435185-34435752,34436579-34436640,34437569-34437636
Length = 893
Score = 27.9 bits (59), Expect = 9.8
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -1
Query: 426 KFENRLRSFRPQCL*SFALPDETVLKFYIDASYPEGNF-GRNQLLDGSISLSPLY 265
K E LRSF + LP K+ I A++ GN+ GRN GS L L+
Sbjct: 93 KQEETLRSFPDGQRNCYTLPTNRSKKYLIRATFTYGNYDGRNSSESGSPFLFGLH 147
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,101,913
Number of Sequences: 37544
Number of extensions: 504291
Number of successful extensions: 1059
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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