Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_F19
(820 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0660 + 18463011-18463322,18463424-18463516,18464500-184646... 32 0.48
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 32 0.63
04_04_0959 + 29692740-29693035,29693102-29693267,29693433-296936... 31 1.5
03_01_0515 - 3864796-3865425 31 1.5
02_05_0686 - 30900748-30902167,30903442-30904742 30 2.5
08_01_0870 - 8491020-8491109,8491523-8491660,8492442-8492568,849... 29 3.4
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 29 3.4
09_04_0506 - 18188785-18190599 29 4.4
12_02_1174 - 26696869-26698191 29 5.9
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 28 7.8
07_01_0516 - 3850252-3852870 28 7.8
07_01_0080 + 587674-588510 28 7.8
06_02_0122 - 12095385-12095713,12096018-12096120 28 7.8
04_01_0530 - 6928528-6929500,6929514-6930964 28 7.8
02_05_0822 + 32025992-32026696,32027237-32027314,32027547-320277... 28 7.8
02_01_0054 - 404464-405152,406087-406618 28 7.8
>04_03_0660 +
18463011-18463322,18463424-18463516,18464500-18464607,
18464892-18465044,18465256-18465354,18465443-18465571,
18465987-18466166,18466208-18466246,18466247-18466363,
18466445-18466609
Length = 464
Score = 32.3 bits (70), Expect = 0.48
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +3
Query: 720 PXPXXXXXXSRPXPPXXXXPPXXPGXPAPPP 812
P P S P PP PP P P PPP
Sbjct: 39 PPPARHRAPSPPRPPPPPPPPTQPAPPPPPP 69
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 31.9 bits (69), Expect = 0.63
Identities = 14/43 (32%), Positives = 15/43 (34%)
Frame = +3
Query: 684 PXXPXXXXXXXXPXPXXXXXXSRPXPPXXXXPPXXPGXPAPPP 812
P P P P S+P PP P P P PPP
Sbjct: 83 PPPPQMYYQPPPPPPPYGVNSSQPPPPPPPPPSPPPSAPPPPP 125
>04_04_0959 +
29692740-29693035,29693102-29693267,29693433-29693612,
29693703-29693771,29693888-29694088,29694187-29694240,
29694325-29694386,29694488-29694620,29694789-29694899,
29695008-29695104,29695638-29695714,29696129-29696194,
29696431-29696583,29697392-29697447,29697524-29697584,
29697656-29697766,29698010-29698144,29698217-29698447,
29699001-29699075,29699161-29699282,29699381-29699453,
29699538-29699642,29699728-29699895,29700079-29700148,
29700224-29700375,29700574-29700651,29700744-29700836,
29700961-29701098,29701237-29701276,29701350-29701423,
29701777-29701911,29702345-29702464,29702778-29702939
Length = 1287
Score = 30.7 bits (66), Expect = 1.5
Identities = 23/80 (28%), Positives = 30/80 (37%)
Frame = +1
Query: 103 CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPAFETC*HS*VRVHRANTGRSSNE 282
CG V H L V LP R + A C + +R HR ++ RS
Sbjct: 20 CGLAAVAAGQVRHSPLLRAPVPGLLPERQAPEGRRPLAASRCLPTCLRRHRRSSRRSHRR 79
Query: 283 LDRQTTELERRGSGAAALGW 342
R++ L RR LGW
Sbjct: 80 CRRRSPRLWRRSGSGFLLGW 99
>03_01_0515 - 3864796-3865425
Length = 209
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = +3
Query: 684 PXXPXXXXXXXXPXPXXXXXXSRPXPPXXXXPPXXPGXPAPPP 812
P P P P S P PP PP P PPP
Sbjct: 61 PPPPAAGPLMPPPPPPPSVTSSPPPPPLPPPPPPPAASPPPPP 103
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/45 (33%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Frame = +3
Query: 684 PXXPXXXXXXXXPXPXXXXXXSRPXPPXXXXPPXXP--GXPAPPP 812
P P P P + P PP PP P G P PPP
Sbjct: 314 PPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPP 358
>08_01_0870 -
8491020-8491109,8491523-8491660,8492442-8492568,
8492667-8492801,8493262-8493731
Length = 319
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -1
Query: 820 GXXGGGAGXPGXXGGXXXXGGXG 752
G GGG G PG GG GG G
Sbjct: 40 GAGGGGVGAPGGRGGVVGVGGGG 62
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = +3
Query: 684 PXXPXXXXXXXXPXPXXXXXXSRPXPPXXXXPPXXPGXPAPPP 812
P P P P P PP P P PAPPP
Sbjct: 1158 PPLPPSPPPATPPPPPPLSPSLPPPPPPPPLPSGPPPQPAPPP 1200
>09_04_0506 - 18188785-18190599
Length = 604
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -1
Query: 820 GXXGGGAGXPGXXGGXXXXGGXGR 749
G GGG G PG GG G GR
Sbjct: 311 GGRGGGGGGPGGGGGGGGGGNWGR 334
>12_02_1174 - 26696869-26698191
Length = 440
Score = 28.7 bits (61), Expect = 5.9
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +3
Query: 750 RPXPPXXXXPPXXPGXPAPPP 812
+P PP PP P P PPP
Sbjct: 145 KPQPPPSLPPPPPPPPPPPPP 165
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +3
Query: 720 PXPXXXXXXSRPXPPXXXXPPXXPGXPAPPP 812
P P + P PP PP PG P PPP
Sbjct: 614 PPPPPRPPGAPPPPP----PPGKPGGPPPPP 640
>07_01_0516 - 3850252-3852870
Length = 872
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +3
Query: 726 PXXXXXXSRPXPPXXXXPPXXPGXPAPPP 812
P SRP PP PP G P+PPP
Sbjct: 16 PPQPPPTSRPLPPPPPPPPPAHG-PSPPP 43
>07_01_0080 + 587674-588510
Length = 278
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +3
Query: 720 PXPXXXXXXSRPXPPXXXXPPXXPGXPAPPP 812
P P S PP PP P P PPP
Sbjct: 91 PPPPPPPPPSSGSPPPPPPPPPPPPPPPPPP 121
>06_02_0122 - 12095385-12095713,12096018-12096120
Length = 143
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/46 (36%), Positives = 17/46 (36%)
Frame = -1
Query: 820 GXXGGGAGXPGXXGGXXXXGGXGREXXXXXXGXGXXXXXXXXGXXG 683
G GGG G PG GG GG GR G G G G
Sbjct: 81 GGYGGGYGHPGYGGG--YGGGYGRGYGGGYGGSGGGYGGGYGGGYG 124
>04_01_0530 - 6928528-6929500,6929514-6930964
Length = 807
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +1
Query: 76 VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 216
+SP+LCY+ C RK+ +L+ + SGLPP++ S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515
>02_05_0822 +
32025992-32026696,32027237-32027314,32027547-32027713,
32027811-32027885,32028624-32028742,32028908-32029204,
32029275-32029362,32029467-32029572,32029727-32029837,
32030520-32030683,32031237-32031357,32031958-32032182,
32032267-32032457,32032658-32032825,32032911-32033016,
32033301-32033438,32033533-32033697,32033777-32033980,
32034341-32034535,32034603-32034674,32034797-32034949
Length = 1215
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 365 PPQAFR-GHQPSAAAPLPLRSNSVVCRSNS 279
PP+ FR GH P AAAP PLR++ S S
Sbjct: 32 PPEKFRSGHLPRAAAP-PLRTDDGSVASGS 60
>02_01_0054 - 404464-405152,406087-406618
Length = 406
Score = 28.3 bits (60), Expect = 7.8
Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Frame = -1
Query: 349 EDTSQVLQPHSPCVPTQSFVDPIHL-------KICLYSHGGLGLTNVSMSQMQGQVDYDF 191
E S + P V + +VDP L K +YS G L L ++ S G D
Sbjct: 260 EGFSAAVAPTRAAVGSPGYVDPFFLRTGIVSKKSDVYSFGVLLLEAITGSPAAGIPGPDG 319
Query: 190 GVGGGVPIVRCEERVDHEG 134
G GGG R RV EG
Sbjct: 320 GAGGGNLTARLLPRVRTEG 338
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,536,971
Number of Sequences: 37544
Number of extensions: 398804
Number of successful extensions: 2220
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2027
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -