Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_F17
         (972 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.061
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.32 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    25   1.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.0  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   5.3  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.1 bits (72), Expect = 0.061
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -3

Query: 595 PPPPPPXXGXXXXXXXXXPPPPP 527
           PPPPPP  G         PPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.9 bits (59), Expect = 2.3
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -3

Query: 601 KTPPPPPPXXGXXXXXXXXXPPPPP 527
           K+PPPPPP            P PPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPP 754



 Score = 25.8 bits (54), Expect = 9.2
 Identities = 21/64 (32%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
 Frame = -2

Query: 641 PPPXXXXXXXXKKXNAXPPP-PXGGGXXXXXKXXPPPPPXGGEKXXXXXXPPFXKXPPXF 465
           PPP              PPP P  GG        PPPPP  G        PP    PP  
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGP-------PPPPPPPGVAGAGPPPPP--PPPPAV 785

Query: 464 SRXG 453
           S  G
Sbjct: 786 SAGG 789



 Score = 25.0 bits (52), Expect(2) = 1.7
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = -3

Query: 652 GGXXPPXXXXXXXXXKXKTPPPPPP 578
           GG  PP             PPPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 21.4 bits (43), Expect(2) = 1.7
 Identities = 8/22 (36%), Positives = 8/22 (36%)
 Frame = -3

Query: 595 PPPPPPXXGXXXXXXXXXPPPP 530
           PPPPPP             P P
Sbjct: 776 PPPPPPPPAVSAGGSRYYAPAP 797


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.7 bits (66), Expect = 0.32
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = -3

Query: 595 PPPPPPXXGXXXXXXXXXPPPPPXG 521
           PPPPPP  G         PPPPP G
Sbjct: 9   PPPPPPPPG--FEPPSQPPPPPPPG 31



 Score = 27.1 bits (57), Expect = 4.0
 Identities = 14/36 (38%), Positives = 14/36 (38%)
 Frame = -2

Query: 599 NAXPPPPXGGGXXXXXKXXPPPPPXGGEKXXXXXXP 492
           N  PPPP  G         PPPPP G  K      P
Sbjct: 8   NPPPPPPPPG--FEPPSQPPPPPPPGYVKKRKNKTP 41



 Score = 26.2 bits (55), Expect = 7.0
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +2

Query: 638 GXXPPPPPPXXFFXXXXPXXP 700
           G  PPPPPP  F     P  P
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPP 27



 Score = 22.6 bits (46), Expect(2) = 7.6
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 635 GGXXPPPPPP 664
           G   PPPPPP
Sbjct: 7   GNPPPPPPPP 16



 Score = 21.4 bits (43), Expect(2) = 7.6
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +2

Query: 647 PPPPPPXXF 673
           PPPPPP  +
Sbjct: 24  PPPPPPPGY 32


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.0 bits (52), Expect(2) = 1.9
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +2

Query: 635 GGXXPPPPPP 664
           GG  PPPPPP
Sbjct: 303 GGLPPPPPPP 312



 Score = 21.4 bits (43), Expect(2) = 1.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 647 PPPPPPXXFF 676
           PPPPPP   F
Sbjct: 309 PPPPPPSNDF 318


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 12/38 (31%), Positives = 12/38 (31%)
 Frame = -2

Query: 584 PPXGGGXXXXXKXXPPPPPXGGEKXXXXXXPPFXKXPP 471
           PP G G        PPPPP           P     PP
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPP 362


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = -3

Query: 598 TPPPPPPXXGXXXXXXXXXPPPPPXGGK 515
           T PPPPP             PPPP  G+
Sbjct: 906 TLPPPPPTASMTASAPAIASPPPPKVGE 933


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,462,239
Number of Sequences: 5004
Number of extensions: 22317
Number of successful extensions: 158
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 499296500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)