Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_F14
(801 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 30 0.44
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 1.0
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 29 1.0
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1... 27 2.3
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 3.1
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 27 3.1
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 3.1
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 3.1
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 27 4.1
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 26 5.4
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 26 7.2
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 26 7.2
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce... 26 7.2
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 9.5
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ... 25 9.5
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 25 9.5
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ... 25 9.5
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 29.9 bits (64), Expect = 0.44
Identities = 17/39 (43%), Positives = 18/39 (46%)
Frame = +3
Query: 540 SPAISATSTRSSNPRFHTPTTPDLTSISINPLDAVLKGV 656
S IS +ST N FH PT TS S A KGV
Sbjct: 801 SRTISTSSTNEYNTSFHAPTVSSTTSSSSTTSLAANKGV 839
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.7 bits (61), Expect = 1.0
Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 4/111 (3%)
Frame = +2
Query: 278 TGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVT 457
T T S +T + +S+ Y + + + S P PVT C T+ V
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSV--PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539
Query: 458 VEGVNVLATPSSSRITIGGLALMHQATLPCDLGYI----NPIIKSPIPYTN 598
V +TP ++ ++ + +T Y P+ +P+ TN
Sbjct: 540 YTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 590
Score = 27.9 bits (59), Expect = 1.8
Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 6/109 (5%)
Frame = +2
Query: 290 TKSNSVTVQSLPNVSSIIKG--YRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVE 463
T +N T S+P S+ + +V + S P P+T C T+ +
Sbjct: 423 TTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYT 482
Query: 464 GVNVLATPSSSRITIGGLALMHQATLPCDLGYI----NPIIKSPIPYTN 598
V +TP ++ ++ + +T Y P+ +P+ TN
Sbjct: 483 STPVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 531
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 28.7 bits (61), Expect = 1.0
Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +2
Query: 278 TGTETKSNSVTV-QSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTA 448
TG +T+ QSL N+S S I R N A FPS S +P VDL
Sbjct: 308 TGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQM 366
Query: 449 DVTVEGVNVLATPSSS 496
DV+ E L+TP S
Sbjct: 367 DVSDEEQRFLSTPLGS 382
>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 525 IRARPPIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILR 406
I A P +R AS+ TP+ T+A+ QQ GI+R
Sbjct: 9 IPAEPSAAVRSGNAAASS-TPNMKTAAIQQQIDDTVGIMR 47
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 260 RLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD-AYLVN 373
R+Y L T ++S + PN S + +GY + A+L+N
Sbjct: 2840 RVYLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLIN 2878
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Frame = +3
Query: 537 PSPAISATSTRSSN---PRFHTPTTPD 608
P P+IS T+T SS H PTTPD
Sbjct: 273 PKPSISTTTTGSSYRSAESSHAPTTPD 299
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.1 bits (57), Expect = 3.1
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +2
Query: 14 YSLEEIVPLXVSAASAIPSLVNA-FSSSKPPQTDNPSARS 130
Y ++ +P A A S NA FSSS PPQ N S S
Sbjct: 1593 YGVKPTLPETPKPAIATHSRYNASFSSSPPPQPGNSSGMS 1632
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.1 bits (57), Expect = 3.1
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +2
Query: 14 YSLEEIVPLXVSAASAIPSLVNA-FSSSKPPQTDNPSARS 130
Y ++ +P A A S NA FSSS PPQ N S S
Sbjct: 1593 YGVKPTLPETPKPAIATHSRYNASFSSSPPPQPGNSSGMS 1632
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 4.1
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +2
Query: 341 IKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 430
+K RD YL NLEA FPS+ +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +3
Query: 528 IKPPSPAISATSTRSSNPRFHTPTTPDLTSISINPLDA 641
++ PS ++ +++ + P+ PD T+ S P+DA
Sbjct: 101 VEAPSSTVAESTSTTQTVAAAAPSNPDTTATSEAPIDA 138
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +3
Query: 546 AISATSTRSSNPRFHTPTTPDLTSISINPLDAVLKGVRXGVKASV 680
A+ ++ S F PTT S+SI+P + V+A V
Sbjct: 69 AVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADV 113
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -1
Query: 510 PIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILRLGAEGKTTAS 376
P ++E + TL +T+T V + + +L++ AEGK TAS
Sbjct: 507 PEEIKERIAIPKTLI-ATITLPDVSPNAKIELVLQIDAEGKLTAS 550
>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 357
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -2
Query: 101 GVWKKRKH*PRREWPKRQKRXKAQF 27
G WKK + + EW K ++ KA++
Sbjct: 119 GEWKKAREEDKAEWKKAREEDKAEW 143
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.4 bits (53), Expect = 9.5
Identities = 19/61 (31%), Positives = 25/61 (40%)
Frame = +1
Query: 532 SHPPLRSRLHQPDHQIPDSIHQPPQT*HPFPSIPWTPY*KEFAPGLKPPLVIRXSIXVSH 711
S PP+R + P + PP + P PS P P AP PPL + V +
Sbjct: 1688 STPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAP--PPPLPASSAPSVPN 1745
Query: 712 P 714
P
Sbjct: 1746 P 1746
>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 324
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 14 YSLEEIVPLXVSAASAIPSLVNAFSSSKPPQTD 112
+ + + +P+ ++A IPSL A SK P T+
Sbjct: 240 FDIFDFIPMIFTSALLIPSLYPALERSKLPFTE 272
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 561 STRSSNPRFHTPTTPDLTSISINPLDAVL 647
S R+ +P+F +P ++S + NP +A L
Sbjct: 196 SNRNGDPKFRFSVSPWISSSNFNPYEASL 224
>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 521 LMHQATLPCDLGYINPIIKSPIPYTNHP 604
+ HQA L C GY + + +P+ N P
Sbjct: 348 ICHQAILRCIYGYYHNLSLEELPFINVP 375
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,028,109
Number of Sequences: 5004
Number of extensions: 59533
Number of successful extensions: 237
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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