Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_F09
(885 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.054
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.12
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.17
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 2.0
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 27 3.6
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 27 4.7
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 26 8.2
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.1 bits (72), Expect = 0.054
Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Frame = +1
Query: 457 GGPPPPPPXXXL--XXPPPPP 513
GGPPPPPP + PPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPP 779
Score = 31.1 bits (67), Expect = 0.22
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = +1
Query: 466 PPPPPXXXLXXPPPPPXXXKKXXXXXPPP 552
P PPP + PPPPP PPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778
Score = 29.5 bits (63), Expect = 0.67
Identities = 16/52 (30%), Positives = 17/52 (32%)
Frame = +1
Query: 463 PPPPPPXXXLXXPPPPPXXXKKXXXXXPPPXXXXXXXXXXXPPXXXXXXPPP 618
PPPPPP + P P P PP PP PPP
Sbjct: 732 PPPPPPAVIVPTPAPAP------IPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +1
Query: 463 PPPPPPXXXLXXPPPPPXXXKKXXXXXPPP 552
P PPP PPPPP PPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +1
Query: 463 PPPPPPXXXLXXPPPPPXXXKKXXXXXPPP 552
PPP P PPPPP PPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/51 (29%), Positives = 15/51 (29%), Gaps = 1/51 (1%)
Frame = +3
Query: 465 PPXPPXXXXXAXPPPP-PXXKKXXXXXXPPPXXXPXXXXXXXPXXXXXPPP 614
PP PP P P P PPP P P PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.9 bits (69), Expect = 0.12
Identities = 17/54 (31%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Frame = +2
Query: 464 PPXPPPXIXXRXPPP-PPXXKKKXXXXXPPPXXXXXXXXXXXPPXXXXXXPPPP 622
PP PPP R PP PPP PP PPPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365
Score = 29.5 bits (63), Expect = 0.67
Identities = 16/53 (30%), Positives = 16/53 (30%), Gaps = 1/53 (1%)
Frame = +1
Query: 463 PPPPPPXXXLXXPPPPPXXXKKXXXXXPPPXXXXXXXXXXXP-PXXXXXXPPP 618
PPPPPP PP PPP P P PPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPP 363
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.5 bits (68), Expect = 0.17
Identities = 15/35 (42%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Frame = +1
Query: 457 GGPPPPPPXXXL-----XXPPPPPXXXKKXXXXXP 546
G PPPPPP PPPPP KK P
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.9 bits (59), Expect = 2.0
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = +1
Query: 463 PPPPPPXXXLXXPPPPPXXXKKXXXXXPPP 552
P PPPP + PP P PPP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/43 (30%), Positives = 14/43 (32%)
Frame = +1
Query: 463 PPPPPPXXXLXXPPPPPXXXKKXXXXXPPPXXXXXXXXXXXPP 591
PPPP PPPP + PPP PP
Sbjct: 208 PPPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 250
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/43 (30%), Positives = 14/43 (32%)
Frame = +1
Query: 463 PPPPPPXXXLXXPPPPPXXXKKXXXXXPPPXXXXXXXXXXXPP 591
PPPP PPPP + PPP PP
Sbjct: 221 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 263
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/43 (30%), Positives = 14/43 (32%)
Frame = +1
Query: 463 PPPPPPXXXLXXPPPPPXXXKKXXXXXPPPXXXXXXXXXXXPP 591
PPPP PPPP + PPP PP
Sbjct: 234 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 276
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/43 (30%), Positives = 14/43 (32%)
Frame = +1
Query: 463 PPPPPPXXXLXXPPPPPXXXKKXXXXXPPPXXXXXXXXXXXPP 591
PPPP PPPP + PPP PP
Sbjct: 247 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 289
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/43 (30%), Positives = 14/43 (32%)
Frame = +1
Query: 463 PPPPPPXXXLXXPPPPPXXXKKXXXXXPPPXXXXXXXXXXXPP 591
PPPP PPPP + PPP PP
Sbjct: 260 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 302
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/43 (30%), Positives = 14/43 (32%)
Frame = +1
Query: 463 PPPPPPXXXLXXPPPPPXXXKKXXXXXPPPXXXXXXXXXXXPP 591
PPPP PPPP + PPP PP
Sbjct: 273 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 315
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/43 (30%), Positives = 14/43 (32%)
Frame = +1
Query: 463 PPPPPPXXXLXXPPPPPXXXKKXXXXXPPPXXXXXXXXXXXPP 591
PPPP PPPP + PPP PP
Sbjct: 286 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 328
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/43 (30%), Positives = 14/43 (32%)
Frame = +1
Query: 463 PPPPPPXXXLXXPPPPPXXXKKXXXXXPPPXXXXXXXXXXXPP 591
PPPP PPPP + PPP PP
Sbjct: 299 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 341
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/29 (34%), Positives = 12/29 (41%)
Frame = +2
Query: 464 PPXPPPXIXXRXPPPPPXXKKKXXXXXPP 550
PP P P + PPPP + PP
Sbjct: 731 PPTPAPTPAVKHHPPPPPVRSSISPSMPP 759
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 25.8 bits (54), Expect = 8.2
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +1
Query: 424 GGGXXKXGXXXGGPPPPP 477
GGG G GGPPP P
Sbjct: 187 GGGFGGFGGGSGGPPPGP 204
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,245,776
Number of Sequences: 5004
Number of extensions: 39006
Number of successful extensions: 302
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -