Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_F08
         (861 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890...    30   2.1  
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384...    29   3.6  
03_04_0006 + 16257288-16259522                                         29   4.8  
06_03_0854 + 25400855-25403741,25406174-25407708                       29   6.3  

>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
            8905437-8905690,8905785-8908799,8908889-8909001,
            8909975-8910164,8910399-8910512,8910591-8910698,
            8910941-8911073,8911206-8911408,8911626-8911826
          Length = 1889

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 175  GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKKTL 312
            G+  PR +  D  EW N  PT+   ++ + +PRE     Q+ K  +
Sbjct: 1393 GNCAPRTVECDEGEWYNNFPTIDENHVQRNKPREEQIFQQKLKPAI 1438


>03_02_0740 -
           10836752-10837052,10837756-10837814,10837901-10838476,
           10839965-10841686,10841776-10842173,10842264-10842318,
           10842989-10843048,10843444-10843540,10844885-10844955,
           10845029-10845109,10846054-10846124,10847951-10848119,
           10848521-10848683,10848752-10848942,10849037-10849168
          Length = 1381

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 592 PPQSNSPPGSVXEPDHAGVLNGDE 521
           P  +NS P +V +PD   +LNGDE
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDE 762


>03_04_0006 + 16257288-16259522
          Length = 744

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = -3

Query: 382 AKRSP---TYATPLTSPYNARLESSPTGSSFPADSPKPVPLAVVSLDSR*GQWE 230
           A+RSP    Y T L +   ARL    T    PA SP    +AV S   + G W+
Sbjct: 162 ARRSPWTVVYGTNLRTGETARLTPRGTFDLSPAVSPSGKRVAVASWQGKPGLWD 215


>06_03_0854 + 25400855-25403741,25406174-25407708
          Length = 1473

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 382 AKRSPTYATPLTSPYNARLESSPTGSSFPADSPKPVPLAVVS 257
           AKR+PT  T    P  AR  ++    +F   +P P P +V+S
Sbjct: 475 AKRAPTAVTVGAPPPQARTPAAAPAKAF-VSAPAPAPSSVIS 515


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,525,499
Number of Sequences: 37544
Number of extensions: 385774
Number of successful extensions: 1138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)