Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_F07
(772 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF040660-2|AAC71147.1| 302|Caenorhabditis elegans Collagen prot... 33 0.30
U32275-1|AAA75370.1| 982|Caenorhabditis elegans serine-threonin... 32 0.52
U11280-5|AAA19437.1| 982|Caenorhabditis elegans Protein kinase ... 32 0.52
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr... 30 1.6
U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily ass... 30 1.6
U50135-6|AAN63429.1| 925|Caenorhabditis elegans Hypothetical pr... 30 1.6
DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein. 30 1.6
AC006729-10|AAL32234.1| 487|Caenorhabditis elegans Hypothetical... 30 1.6
AC006729-9|AAF60470.1| 670|Caenorhabditis elegans Hypothetical ... 30 1.6
X70836-1|CAA50184.1| 636|Caenorhabditis elegans Cytoplasmic int... 30 2.1
U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate fi... 30 2.1
U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate fi... 30 2.1
U97405-1|AAB53007.1| 327|Caenorhabditis elegans Hypothetical pr... 29 3.7
AC084197-15|AAN63425.1| 391|Caenorhabditis elegans Hypothetical... 29 3.7
AC084197-14|AAM44396.1| 526|Caenorhabditis elegans Hypothetical... 29 3.7
AC084197-13|AAM44395.1| 571|Caenorhabditis elegans Hypothetical... 29 3.7
AL110490-3|CAB54449.1| 892|Caenorhabditis elegans Hypothetical ... 29 4.8
AF016656-1|AAB66040.1| 332|Caenorhabditis elegans Hypothetical ... 29 4.8
Z32673-1|CAA83585.1| 472|Caenorhabditis elegans transcription f... 28 6.4
U64837-3|AAB04837.1| 782|Caenorhabditis elegans Hypothetical pr... 28 6.4
U41535-12|AAK67251.1| 438|Caenorhabditis elegans Abnormal cell ... 28 6.4
AJ130957-1|CAA10262.1| 438|Caenorhabditis elegans LIN-26B protein. 28 6.4
AF067623-2|AAC17554.1| 240|Caenorhabditis elegans Hypothetical ... 28 6.4
Z29443-2|CAA82581.1| 648|Caenorhabditis elegans Hypothetical pr... 28 8.5
Z29443-1|CAA82576.1| 649|Caenorhabditis elegans Hypothetical pr... 28 8.5
>AF040660-2|AAC71147.1| 302|Caenorhabditis elegans Collagen protein
88 protein.
Length = 302
Score = 32.7 bits (71), Expect = 0.30
Identities = 20/56 (35%), Positives = 26/56 (46%)
Frame = +1
Query: 277 AWSGVCQMERALAGGARPNFGHSSAHARGTGACAGGMVGPATR*ALLSPHPGPFGA 444
AW + Q + GGA P+FG A+ +G+C GP P PGP GA
Sbjct: 53 AWRSMVQANAPVNGGALPDFGSIFTRAKRSGSC---NCGPQPSNCPAGP-PGPPGA 104
>U32275-1|AAA75370.1| 982|Caenorhabditis elegans serine-threonine
kinase protein.
Length = 982
Score = 31.9 bits (69), Expect = 0.52
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +3
Query: 387 GRTGDTVSSPFASPRSFRGMDASGG 461
GR GD+ SS AS SFR M +SGG
Sbjct: 355 GRAGDSASSRSASLTSFRSMQSSGG 379
>U11280-5|AAA19437.1| 982|Caenorhabditis elegans Protein kinase
protein 18, isoforma protein.
Length = 982
Score = 31.9 bits (69), Expect = 0.52
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +3
Query: 387 GRTGDTVSSPFASPRSFRGMDASGG 461
GR GD+ SS AS SFR M +SGG
Sbjct: 355 GRAGDSASSRSASLTSFRSMQSSGG 379
>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical
protein F36F2.3a protein.
Length = 1128
Score = 30.3 bits (65), Expect = 1.6
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = -2
Query: 420 RKESSPCRRSDHASSTGTSASSVR*--RVAEVRPSSSSKRSLHLAYARPRAARLHRSTTD 247
R +S RR D +SS+ S+SS R + R SSK+ + RPR A HR D
Sbjct: 495 RHDSRSRRRRDSSSSSSMSSSSSDEDERRRKRREKESSKKRRSVEKERPRRADEHRRDRD 554
Query: 246 GPGVRSR 226
R R
Sbjct: 555 RDRERDR 561
>U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 326 protein.
Length = 560
Score = 30.3 bits (65), Expect = 1.6
Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 2/99 (2%)
Frame = -2
Query: 441 PERTWVRRKESSPCRRSDHASSTGTSASSVR*RVAEVRPSS--SSKRSLHLAYARPRAAR 268
PER R ++SSP +R D S SS+R VR S + H + + R
Sbjct: 398 PERRSSRDRKSSPKQRQDSPVRRRRSPSSIRKESQRVRKHSPEQKRNGRHDSRSVSPVRR 457
Query: 267 LHRSTTDGPGVRSRVEDCVLRRYVAAKISASRSLGKDPA 151
+ D + SR + LRR ++ + AS + P+
Sbjct: 458 RRSPSPDNRQLGSRKQYSPLRRRQSSPMVASPRRRRSPS 496
>U50135-6|AAN63429.1| 925|Caenorhabditis elegans Hypothetical
protein C52E12.1 protein.
Length = 925
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = -3
Query: 392 PTMPPAQAPVPRACADEWPKFGR----APPASALSIWHTPDHAQHASIDRQPTGRVSVP 228
P++ P QAP P + E+P+ + A PA+ + H P +S P R+ VP
Sbjct: 426 PSLAP-QAPPPNVRSSEFPRLNKANKPAAPAAPAVVDHFPSLGDSSSSSSAPPLRIKVP 483
>DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein.
Length = 560
Score = 30.3 bits (65), Expect = 1.6
Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 2/99 (2%)
Frame = -2
Query: 441 PERTWVRRKESSPCRRSDHASSTGTSASSVR*RVAEVRPSS--SSKRSLHLAYARPRAAR 268
PER R ++SSP +R D S SS+R VR S + H + + R
Sbjct: 398 PERRSSRDRKSSPKQRQDSPVRRRRSPSSIRKESQRVRKHSPEQKRNGRHDSRSVSPVRR 457
Query: 267 LHRSTTDGPGVRSRVEDCVLRRYVAAKISASRSLGKDPA 151
+ D + SR + LRR ++ + AS + P+
Sbjct: 458 RRSPSPDNRQLGSRKQYSPLRRRQSSPMVASPRRRRSPS 496
>AC006729-10|AAL32234.1| 487|Caenorhabditis elegans Hypothetical
protein Y24D9A.1b protein.
Length = 487
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -3
Query: 443 APKGPG*GERRAHRVAGPTMPPAQAPVPRACADEWPKFGRAPP 315
AP P +RRAH +A P PP Q P+ + + + G PP
Sbjct: 419 APPEPA-NKRRAHNLAPPPPPPVQVVTPQTTSSQ-TETGPLPP 459
>AC006729-9|AAF60470.1| 670|Caenorhabditis elegans Hypothetical
protein Y24D9A.1a protein.
Length = 670
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -3
Query: 443 APKGPG*GERRAHRVAGPTMPPAQAPVPRACADEWPKFGRAPP 315
AP P +RRAH +A P PP Q P+ + + + G PP
Sbjct: 419 APPEPA-NKRRAHNLAPPPPPPVQVVTPQTTSSQ-TETGPLPP 459
>X70836-1|CAA50184.1| 636|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 636
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 304 RALAGGARPNFGHSSAHARGTGACAGGMVGPATR 405
R L GA S+ H G+G GG+VG +TR
Sbjct: 389 RILLNGANVTTYTSNTHGSGSGIAVGGVVGGSTR 422
>U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate
filament, c protein2, isoform a protein.
Length = 1128
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 304 RALAGGARPNFGHSSAHARGTGACAGGMVGPATR 405
R L GA S+ H G+G GG+VG +TR
Sbjct: 1015 RILLNGANVTTYTSNTHGSGSGIAVGGVVGGSTR 1048
>U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate
filament, c protein2, isoform b protein.
Length = 1248
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 304 RALAGGARPNFGHSSAHARGTGACAGGMVGPATR 405
R L GA S+ H G+G GG+VG +TR
Sbjct: 1015 RILLNGANVTTYTSNTHGSGSGIAVGGVVGGSTR 1048
>U97405-1|AAB53007.1| 327|Caenorhabditis elegans Hypothetical
protein T09B4.5a protein.
Length = 327
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = -2
Query: 441 PERTWVRRKESSPCRRSDHASSTGTSASSVR*RVAEVRPSSSSKRSLHLAYARP-RAARL 265
P R + +P R + +++ G +AS + PSS+S RS + RP A+RL
Sbjct: 45 PARARTSNVKKTPSRSASKSATRGRTASKTP-KTPSKTPSSASARSRSRSRGRPTNASRL 103
Query: 264 HRST 253
ST
Sbjct: 104 SAST 107
>AC084197-15|AAN63425.1| 391|Caenorhabditis elegans Hypothetical
protein Y73B6BL.5c protein.
Length = 391
Score = 29.1 bits (62), Expect = 3.7
Identities = 29/80 (36%), Positives = 36/80 (45%)
Frame = -2
Query: 468 HRYLPKHPCPERTWVRRKESSPCRRSDHASSTGTSASSVR*RVAEVRPSSSSKRSLHLAY 289
H+ + P + KES RRS+ S+ SA+S SSSSKRS H A
Sbjct: 244 HKERRRSPATRQRATDHKES---RRSEGTSTRVESAASAAAPPPPPSSSSSSKRS-HEAA 299
Query: 288 ARPRAARLHRSTTDGPGVRS 229
AR RA R + G RS
Sbjct: 300 ARIRAPSPPRRSFGDRGNRS 319
>AC084197-14|AAM44396.1| 526|Caenorhabditis elegans Hypothetical
protein Y73B6BL.5b protein.
Length = 526
Score = 29.1 bits (62), Expect = 3.7
Identities = 29/80 (36%), Positives = 36/80 (45%)
Frame = -2
Query: 468 HRYLPKHPCPERTWVRRKESSPCRRSDHASSTGTSASSVR*RVAEVRPSSSSKRSLHLAY 289
H+ + P + KES RRS+ S+ SA+S SSSSKRS H A
Sbjct: 379 HKERRRSPATRQRATDHKES---RRSEGTSTRVESAASAAAPPPPPSSSSSSKRS-HEAA 434
Query: 288 ARPRAARLHRSTTDGPGVRS 229
AR RA R + G RS
Sbjct: 435 ARIRAPSPPRRSFGDRGNRS 454
>AC084197-13|AAM44395.1| 571|Caenorhabditis elegans Hypothetical
protein Y73B6BL.5a protein.
Length = 571
Score = 29.1 bits (62), Expect = 3.7
Identities = 29/80 (36%), Positives = 36/80 (45%)
Frame = -2
Query: 468 HRYLPKHPCPERTWVRRKESSPCRRSDHASSTGTSASSVR*RVAEVRPSSSSKRSLHLAY 289
H+ + P + KES RRS+ S+ SA+S SSSSKRS H A
Sbjct: 424 HKERRRSPATRQRATDHKES---RRSEGTSTRVESAASAAAPPPPPSSSSSSKRS-HEAA 479
Query: 288 ARPRAARLHRSTTDGPGVRS 229
AR RA R + G RS
Sbjct: 480 ARIRAPSPPRRSFGDRGNRS 499
>AL110490-3|CAB54449.1| 892|Caenorhabditis elegans Hypothetical
protein Y48B6A.3 protein.
Length = 892
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 123 PSLRMWPVPSPDPYRGTSRPKSWPRHTDGEHSPRLGNGHPARRLSID 263
P+LR+ P+ T +P W DG + P++G A R S+D
Sbjct: 712 PALRLDGAKEPEK---TLKPDDWNDRRDGRYQPQVGFNRNAPRGSLD 755
>AF016656-1|AAB66040.1| 332|Caenorhabditis elegans Hypothetical
protein C35A11.3 protein.
Length = 332
Score = 28.7 bits (61), Expect = 4.8
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Frame = -2
Query: 462 YLPKHPCPERTWVRRKESSPCRRSDHASSTGTSASSVR*RVAEVRPSSSSKRSLHLAYAR 283
Y P P P T+ R+ S+ ST T+A+S E+ S+S +
Sbjct: 21 YQPSDPAPFDTFCTRETSTTTATESTTVSTSTTATSST-PTTEIFSSNSPSTETTTCASP 79
Query: 282 PRAARLH-RSTTDGPGVRSRVEDCVLRRY 199
+ H STTDG S ++ VL +Y
Sbjct: 80 TTSTNGHLTSTTDG-AATSPIKTEVLNKY 107
>Z32673-1|CAA83585.1| 472|Caenorhabditis elegans transcription
factor protein.
Length = 472
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = -1
Query: 100 HRERPLSSEQQSRVSRGK-CGRPH 32
HR P++ ++SR SRGK CGR H
Sbjct: 307 HRWLPVNELEESRSSRGKNCGRVH 330
>U64837-3|AAB04837.1| 782|Caenorhabditis elegans Hypothetical
protein T27E4.6 protein.
Length = 782
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -1
Query: 220 GLCSPSVCRGQDFGLEVPR*GSGEGTGHILRDGTV 116
G C P +C G+D+ GS E T H L D V
Sbjct: 157 GFCGPEICHGKDYASMF---GSMEKTFHFLMDRPV 188
>U41535-12|AAK67251.1| 438|Caenorhabditis elegans Abnormal cell
lineage protein 26 protein.
Length = 438
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = -1
Query: 100 HRERPLSSEQQSRVSRGK-CGRPH 32
HR P++ ++SR SRGK CGR H
Sbjct: 273 HRWLPVNELEESRSSRGKNCGRVH 296
>AJ130957-1|CAA10262.1| 438|Caenorhabditis elegans LIN-26B protein.
Length = 438
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = -1
Query: 100 HRERPLSSEQQSRVSRGK-CGRPH 32
HR P++ ++SR SRGK CGR H
Sbjct: 273 HRWLPVNELEESRSSRGKNCGRVH 296
>AF067623-2|AAC17554.1| 240|Caenorhabditis elegans Hypothetical
protein T26C12.2 protein.
Length = 240
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 130 SGCGLCPRRILTEGPRGRNLGRDIPTENTVLDSGTD 237
+G GLCP +L P+ ++ D PT+ T+ + D
Sbjct: 129 AGTGLCPILMLCPMPKNKDKKTDKPTKKTISSAEDD 164
>Z29443-2|CAA82581.1| 648|Caenorhabditis elegans Hypothetical
protein T07C4.3b protein.
Length = 648
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -1
Query: 160 GSGEGTGHILRDGTVPHDDPHRERPLSSEQQSRVSRGKCGRPHGSTVQLI 11
GSG G+ I+ P D HR+R S E + V C + +I
Sbjct: 490 GSGPGSSEIITVIETPLKDDHRKRADSVESDADVPYSLCSEDEAEPMTMI 539
>Z29443-1|CAA82576.1| 649|Caenorhabditis elegans Hypothetical
protein T07C4.3a protein.
Length = 649
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -1
Query: 160 GSGEGTGHILRDGTVPHDDPHRERPLSSEQQSRVSRGKCGRPHGSTVQLI 11
GSG G+ I+ P D HR+R S E + V C + +I
Sbjct: 491 GSGPGSSEIITVIETPLKDDHRKRADSVESDADVPYSLCSEDEAEPMTMI 540
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,301,224
Number of Sequences: 27780
Number of extensions: 421891
Number of successful extensions: 1497
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1493
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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