Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_F06
(822 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 29 1.1
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 28 1.8
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1... 27 2.4
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ... 27 3.2
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 3.2
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 27 4.3
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 27 4.3
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 4.3
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 26 7.4
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce... 26 7.4
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos... 25 9.8
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ... 25 9.8
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 25 9.8
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 25 9.8
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 28.7 bits (61), Expect = 1.1
Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +3
Query: 279 TGTETKSNSVTV-QSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTA 449
TG +T+ QSL N+S S I R N A FPS S +P VDL
Sbjct: 308 TGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQM 366
Query: 450 DVTVEGVNVLATPSSS 497
DV+ E L+TP S
Sbjct: 367 DVSDEEQRFLSTPLGS 382
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 27.9 bits (59), Expect = 1.8
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +2
Query: 515 SRPYASSHPPLRSRATSTRSSNPRIPYTNHPRLKHPFPSI 634
SRP +S PP+ + T SSN +P N P LK PS+
Sbjct: 366 SRPAHTSLPPIPT--VQTTSSN--VPPVNRPSLKSKSPSV 401
>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -3
Query: 526 IRARPPIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILR 407
I A P +R AS+ TP+ T+A+ QQ GI+R
Sbjct: 9 IPAEPSAAVRSGNAAASS-TPNMKTAAIQQQIDDTVGIMR 47
>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 324
Score = 27.1 bits (57), Expect = 3.2
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +1
Query: 10 DLFMEEIVPLXVSAASAIPSLVNAFSSSKPPQTDNPSARSMVYA 141
D+F + +P+ ++A IPSL A SK P T+ SM YA
Sbjct: 241 DIF--DFIPMIFTSALLIPSLYPALERSKLPFTEK-HVSSMEYA 281
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 261 RLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD-AYLVN 374
R+Y L T ++S + PN S + +GY + A+L+N
Sbjct: 2840 RVYLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLIN 2878
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 4.3
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +3
Query: 342 IKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 431
+K RD YL NLEA FPS+ +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +3
Query: 564 QPDHQIPEF-HTPTTPDLNIHFHQSPERRTKXSSRPGLKPPLSSXAP 701
QP H++ E TPT PD H++ SP + R + + +P
Sbjct: 225 QPTHELNESPSTPTAPDFP-HYNSSPSELSPTQRRSSISNGKDAPSP 270
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 4.3
Identities = 23/109 (21%), Positives = 39/109 (35%)
Frame = +3
Query: 279 TGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVT 458
T T S +T + +S+ Y + + + S P PVT C T+ V
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSV--PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539
Query: 459 VEGVNVLATPSSSRITIGGLALMHQATLPCDLGLHQPDHQIPEFHTPTT 605
V +TP ++ ++ + +T P + P TP T
Sbjct: 540 YTSTPVTSTPLATTNCTTSTSVPYTST-PVTSSNYTISSSTPVTSTPVT 587
Score = 25.8 bits (54), Expect = 7.4
Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 2/107 (1%)
Frame = +3
Query: 291 TKSNSVTVQSLPNVSSIIKG--YRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVE 464
T +N T S+P S+ + +V + S P P+T C T+ +
Sbjct: 423 TTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYT 482
Query: 465 GVNVLATPSSSRITIGGLALMHQATLPCDLGLHQPDHQIPEFHTPTT 605
V +TP ++ ++ + +T P + P TP T
Sbjct: 483 STPVTSTPLTTTNCTTSTSVPYTST-PVTSSNYTISSSTPVTSTPVT 528
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 25.8 bits (54), Expect = 7.4
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -3
Query: 511 PIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILRLGAEGKTTAS 377
P ++E + TL +T+T V + + +L++ AEGK TAS
Sbjct: 507 PEEIKERIAIPKTLI-ATITLPDVSPNAKIELVLQIDAEGKLTAS 550
>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 357
Score = 25.8 bits (54), Expect = 7.4
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -3
Query: 100 GVWKKRKH*PRREWPKRQKRXKAQF 26
G WKK + + EW K ++ KA++
Sbjct: 119 GEWKKAREEDKAEWKKAREEDKAEW 143
>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 891
Score = 25.4 bits (53), Expect = 9.8
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 594 TPTTPDLNIHFHQSPERRTKXSSRPGL 674
TP +N +F P +RT S PGL
Sbjct: 70 TPQLEGMNDYFSLGPSKRTGGSMTPGL 96
>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 369
Score = 25.4 bits (53), Expect = 9.8
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 11/63 (17%)
Frame = -3
Query: 748 EPXLAMPSDEGVRY------ADGAXDDNGGFNPGRELXL-----VRRSGD*WKWMFKSGV 602
+P + PSDE + +D A + G + G+ + L V + WK +F+ GV
Sbjct: 290 KPPVDTPSDEAINSDLDDPDSDEAPETEEGSDIGQAIVLCLYDKVNHHKNKWKCVFRDGV 349
Query: 601 VGV 593
VGV
Sbjct: 350 VGV 352
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 25.4 bits (53), Expect = 9.8
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 633 SPERRTKXSSRPGLKPPLSSXAPSAYLTPSSLGM 734
SP + S P L P SS +PS L SLG+
Sbjct: 325 SPLQSCTNSPSPPLSSPASSASPSESLRNESLGI 358
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 25.4 bits (53), Expect = 9.8
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = +3
Query: 522 LMHQATLPCD--LGLHQPDHQIPEFHTPTTPDLNIHFHQSPERRTKXSSRPGLKPPLSSX 695
++ + LP D L + Q+ + +P+T + P + SS P +KP + S
Sbjct: 244 VLSSSALPYDQLLAIKNQLAQLEKPASPSTSSVATSAPSVPSALSSISSTPFMKPSIPST 303
Query: 696 APSAYLTPSSLGMAKXGSPP 755
P+ PS+ + PP
Sbjct: 304 IPT---IPSAYSASVSSQPP 320
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,068,408
Number of Sequences: 5004
Number of extensions: 59538
Number of successful extensions: 236
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -