Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_F05
(819 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0456 + 29521282-29522064 32 0.63
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 31 1.1
06_03_0507 + 21603472-21603750,21604371-21604463,21605046-216053... 30 2.5
03_04_0006 + 16257288-16259522 30 2.5
06_03_0854 + 25400855-25403741,25406174-25407708 29 4.4
10_08_0788 + 20553587-20553726,20554131-20554196,20554695-205549... 29 5.9
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 5.9
06_03_1448 + 30235336-30236763 28 7.8
06_03_1443 + 30182018-30183445 28 7.8
06_03_1440 + 30166515-30167942 28 7.8
06_03_1437 + 30151030-30152457 28 7.8
06_03_1429 + 30100834-30102261 28 7.8
06_03_1425 + 30084383-30085810 28 7.8
06_03_1420 - 30053713-30055140 28 7.8
04_03_0803 - 19835284-19836050,19836337-19836418 28 7.8
>01_06_0456 + 29521282-29522064
Length = 260
Score = 31.9 bits (69), Expect = 0.63
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Frame = -3
Query: 457 AWQC--PRTGSRGSFKRRRAFPPRHHSARLGR----NTVRPPILSTA 335
AW+C P +G+RG +RRR P S R R +T+RP + S A
Sbjct: 12 AWRCYSPASGARGGSRRRRRRPAGTTSRRCSRADRLDTLRPYVTSAA 58
>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 61 GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKKTLLSL 207
G+ PR + D EW N PT+ ++ + +PRE Q+ K + L
Sbjct: 1393 GNCAPRTVECDEGEWYNNFPTIDENHVQRNKPREEQIFQQKLKPAIFIL 1441
>06_03_0507 +
21603472-21603750,21604371-21604463,21605046-21605372,
21605588-21605863,21606095-21607114
Length = 664
Score = 29.9 bits (64), Expect = 2.5
Identities = 22/65 (33%), Positives = 34/65 (52%)
Frame = -3
Query: 544 PREVSVLAELALGHLRYSLTDVPPQSKLPAWQCPRTGSRGSFKRRRAFPPRHHSARLGRN 365
P+ V LA L+ G+ + PP +LPA + P T + +R +AF +S R ++
Sbjct: 378 PKTVPALAILSYGNGNAA----PPPLQLPAGEPPVTPAWNDTQRSKAFT---YSIRARKD 430
Query: 364 TVRPP 350
T RPP
Sbjct: 431 TNRPP 435
>03_04_0006 + 16257288-16259522
Length = 744
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = -3
Query: 268 AKRSP---TYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWE 116
A+RSP Y T L + ARL T PA SP +AV S + G W+
Sbjct: 162 ARRSPWTVVYGTNLRTGETARLTPRGTFDLSPAVSPSGKRVAVASWQGKPGLWD 215
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 268 AKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVS 143
AKR+PT T P AR +++ +F +P P P +V+S
Sbjct: 475 AKRAPTAVTVGAPPPQARTPAAAPAKAF-VSAPAPAPSSVIS 515
>10_08_0788 +
20553587-20553726,20554131-20554196,20554695-20554926,
20555033-20555237,20555335-20555441
Length = 249
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = +2
Query: 527 DRNLAWSKRAKAGLIQMFSTHRDCESTXYRSFSIKS---FSKRCXKSYHRDNWLVAAK 691
+R L W + A +++ FSTH Y I C KSYH N+++ +K
Sbjct: 125 ERGLEWMR---AEVVEAFSTHSGANVVEYELEDISHQCLIFDDCAKSYHHYNFIMKSK 179
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 28.7 bits (61), Expect = 5.9
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 390 TTLHAWDETPCARRYY 343
TT AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575
>06_03_1448 + 30235336-30236763
Length = 475
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -1
Query: 462 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWDETPCARRYYRPRTAS 325
+PP L +L+ GD+R+ V LH W E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1443 + 30182018-30183445
Length = 475
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -1
Query: 462 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWDETPCARRYYRPRTAS 325
+PP L +L+ GD+R+ V LH W E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1440 + 30166515-30167942
Length = 475
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -1
Query: 462 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWDETPCARRYYRPRTAS 325
+PP L +L+ GD+R+ V LH W E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1437 + 30151030-30152457
Length = 475
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -1
Query: 462 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWDETPCARRYYRPRTAS 325
+PP L +L+ GD+R+ V LH W E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1429 + 30100834-30102261
Length = 475
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -1
Query: 462 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWDETPCARRYYRPRTAS 325
+PP L +L+ GD+R+ V LH W E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1425 + 30084383-30085810
Length = 475
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -1
Query: 462 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWDETPCARRYYRPRTAS 325
+PP L +L+ GD+R+ V LH W E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1420 - 30053713-30055140
Length = 475
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -1
Query: 462 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWDETPCARRYYRPRTAS 325
+PP L +L+ GD+R+ V LH W E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>04_03_0803 - 19835284-19836050,19836337-19836418
Length = 282
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +3
Query: 435 PVRGHCQAGSFDWGGTSVKE*RRCPKASSARTET 536
P HCQ S W G+ + CPK T+T
Sbjct: 145 PPMQHCQTSSTTWTGSCPTQCHCCPKPPPPETKT 178
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,967,833
Number of Sequences: 37544
Number of extensions: 511016
Number of successful extensions: 1574
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1572
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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