Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_F05
(819 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical pr... 29 5.3
AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein. 29 5.3
AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein. 29 5.3
U80836-5|AAB37892.2| 621|Caenorhabditis elegans Hypothetical pr... 28 7.0
AF078788-1|AAC26965.2| 629|Caenorhabditis elegans Hypothetical ... 28 7.0
U00033-14|AAY44014.1| 215|Caenorhabditis elegans Hypothetical p... 28 9.2
AL033536-1|CAA22138.1| 908|Caenorhabditis elegans Hypothetical ... 28 9.2
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/50 (34%), Positives = 20/50 (40%)
Frame = -3
Query: 478 PPQSKLPAWQCPRTGSRGSFKRRRAFPPRHHSARLGRNTVRPPILSTAHR 329
PP+ P PR +R S RRR PP R R R P+ R
Sbjct: 216 PPRRGSPRRGSPRRDTRRSPPRRRGSPPARGGDRRDRREDRRPVRDEKER 265
>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
F54B3.1b protein.
Length = 3394
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -3
Query: 283 FSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKP 164
F DD K ++ S + ESSSTGSS +D P+P
Sbjct: 1429 FLDDEEKTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468
>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
F54B3.1a protein.
Length = 3396
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -3
Query: 283 FSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKP 164
F DD K ++ S + ESSSTGSS +D P+P
Sbjct: 1429 FLDDEEKTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468
>Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical
protein C12C8.3b protein.
Length = 1143
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -3
Query: 511 LGHLRYSLTDVPPQSKLPAWQCPRTG 434
LG +R ++ +V +S+L WQC +TG
Sbjct: 512 LGDIRVAVGEVVNESQLLQWQCEKTG 537
>Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical
protein C12C8.3a protein.
Length = 1147
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -3
Query: 511 LGHLRYSLTDVPPQSKLPAWQCPRTG 434
LG +R ++ +V +S+L WQC +TG
Sbjct: 516 LGDIRVAVGEVVNESQLLQWQCEKTG 541
>AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.
Length = 1147
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -3
Query: 511 LGHLRYSLTDVPPQSKLPAWQCPRTG 434
LG +R ++ +V +S+L WQC +TG
Sbjct: 516 LGDIRVAVGEVVNESQLLQWQCEKTG 541
>AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.
Length = 1143
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -3
Query: 511 LGHLRYSLTDVPPQSKLPAWQCPRTG 434
LG +R ++ +V +S+L WQC +TG
Sbjct: 512 LGDIRVAVGEVVNESQLLQWQCEKTG 537
>U80836-5|AAB37892.2| 621|Caenorhabditis elegans Hypothetical
protein B0432.7 protein.
Length = 621
Score = 28.3 bits (60), Expect = 7.0
Identities = 26/79 (32%), Positives = 39/79 (49%)
Frame = +3
Query: 132 LLSSETTAKGTGLGESAGKEDPVELDSSLAL*GDMRGVA*VGDRFARSSLKNHYFHCFIT 311
+ S TT+ + +S+ ++ LD AL G +R VA + DR R SLKN F+T
Sbjct: 32 IFSLATTSAARYVSDSSA-DNTTRLDE--ALNGMIRYVADM-DRATRLSLKNQQLKEFLT 87
Query: 312 YSVGRKRCAVDNIGGRTVF 368
Y+ + NI R+ F
Sbjct: 88 YTPVILNASTTNIVTRSKF 106
>AF078788-1|AAC26965.2| 629|Caenorhabditis elegans Hypothetical
protein ZC190.4 protein.
Length = 629
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/45 (28%), Positives = 28/45 (62%)
Frame = -2
Query: 377 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCY 243
+GT+ + DIID +P N +S++ + +++ R ET++H+ +
Sbjct: 287 VGTR-KTSTDIIDGFNVPSNMISDDNLPALIY--RVIETLNHMIF 328
>U00033-14|AAY44014.1| 215|Caenorhabditis elegans Hypothetical
protein F37C12.18 protein.
Length = 215
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -3
Query: 559 FCPFAPREVSVLAELALGHLRYSLTDVPPQSKLPAWQ 449
F P P E +++AE +L R S+ P +S + ++Q
Sbjct: 28 FTPVPPHEKALIAEQSLRRFRTSVAKTPSKSDMSSFQ 64
>AL033536-1|CAA22138.1| 908|Caenorhabditis elegans Hypothetical
protein Y53C10A.4 protein.
Length = 908
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = -3
Query: 280 SDDRAKRSPTYATP----LMSPYNARLESSSTGSSFPAD-SPKP 164
+DD R P + + L PY + SSS+ SS P+D +P+P
Sbjct: 681 NDDSDSRFPAFKSSSVAMLTEPYKSSSSSSSSTSSIPSDPAPRP 724
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,315,577
Number of Sequences: 27780
Number of extensions: 387376
Number of successful extensions: 1076
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -