Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_F03
         (805 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   153   2e-37
Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical pr...    32   0.55 
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    29   5.1  
Z75531-7|CAA99798.2|  316|Caenorhabditis elegans Hypothetical pr...    28   9.0  
Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr...    28   9.0  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  153 bits (370), Expect = 2e-37
 Identities = 79/151 (52%), Positives = 96/151 (63%)
 Frame = +1

Query: 109 ARPLXVGVFREE*DGAGXQPSPSRFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 288
           ARPL V V+ E+ +    Q      VF+ PIRPDLV+ +   + +N RQ + V+ +AG Q
Sbjct: 3   ARPL-VTVYDEKYEATQSQIRLPA-VFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQ 60

Query: 289 TSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXX 468
            SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH         
Sbjct: 61  HSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKR 120

Query: 469 XXXXXXXXXXXXXXXXQARGHIIEKIPELPL 561
                           QARGH+I+++ E+PL
Sbjct: 121 YAVSSAIAASGIPALLQARGHVIDQVAEVPL 151



 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 37/82 (45%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
 Frame = +2

Query: 557 PWVVADKVQEINKTKQAVIFLXRLKAWSDILKVYKSXRLRAGKGKCATVVVSSVXGPHNL 736
           P VV+DKV+   KTK+AV+FL R   W+DI KVY S R RAGKGK          GP  +
Sbjct: 150 PLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQHKQKLGPVVI 209

Query: 737 QQGSGSDSR-LPXIPGVEXLNV 799
                  +R    IPGV+ +NV
Sbjct: 210 YGQDAECARAFRNIPGVDVMNV 231


>Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical
           protein F40F8.11 protein.
          Length = 472

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 28/91 (30%), Positives = 34/91 (37%), Gaps = 3/91 (3%)
 Frame = +1

Query: 163 QPSPSRFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRV 342
           +PS S+    AP +P          + N R    V K   H+    SW T     +  R 
Sbjct: 111 KPSVSKIAEAAP-KPIFKVARGTVKTVNKRGTKGVQKMPNHRLEGNSWETNGLQNQTARG 169

Query: 343 RGGGTHR---SGQGAFGNMCRGGRMFAPTKP 426
            GGG  R   SG    G   RGGR     KP
Sbjct: 170 GGGGRGRGRGSGGRGRGGFNRGGRFNGAPKP 200


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 400 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 317
           HHD  +++H  + ++ HHHGH   G  H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145


>Z75531-7|CAA99798.2|  316|Caenorhabditis elegans Hypothetical
           protein C54D10.8 protein.
          Length = 316

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/60 (23%), Positives = 30/60 (50%)
 Frame = +2

Query: 500 ASQRSFRLEDTLLKRFPSFPWVVADKVQEINKTKQAVIFLXRLKAWSDILKVYKSXRLRA 679
           A +R   +ED L +           + QE+N+  + +  L ++K W+D+++   + RL +
Sbjct: 142 AQERLREIEDQLARDLEELRRCDQQRRQEMNEQMENIRRLLQMKIWNDVIESNWTKRLNS 201


>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical
           protein C29A12.4 protein.
          Length = 1560

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 537 NNVSSSLNERWDAGSSNGCRQGRSPLSEVDATVPTP 430
           N VS+ + + ++A +S G   G S  +E+D   P P
Sbjct: 625 NGVSTKIGQEFEASNSTGIELGCSLSNELDICEPNP 660


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,146,657
Number of Sequences: 27780
Number of extensions: 334259
Number of successful extensions: 968
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)