Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_E24
         (824 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    32   0.086
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    31   0.26 
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    27   4.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   5.6  
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...    26   7.5  
SPAC3G6.10c |||GARP complex subunit Vps51 |Schizosaccharomyces p...    26   7.5  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    26   7.5  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 32.3 bits (70), Expect = 0.086
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -2

Query: 796 PPPGXPXPXPPXGKXPPXEXPXPGP 722
           PP   P P PP G  PP + P P P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPP 29


>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 246 VRVHRADTGRSSNELDRQTTELERRGMGL-QHLAG 347
           +R H+   GR+  ELDR+ T+L++R   L Q + G
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQRERALIQEIKG 52


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 324 FPCVPTQSFVDPIHLKICQYPHGGL 250
           F  +P Q+F    H+++C YP GG+
Sbjct: 150 FKEIPQQNFT---HVRLCMYPDGGI 171


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
 Frame = -2

Query: 796  PPPGXPXPXPPXGKXPPXEXPXPGPRXRXXNXEXCXPAXTHP--PGXG*RTALPRSV 632
            P    P P PP    PP     P P           PA + P  P  G R+AL + +
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPGDRSALLQQI 1756


>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +3

Query: 729 GXGXSXGGXXPXGGXGXGXPGGG 797
           G     GG  P GG G G PGGG
Sbjct: 75  GLNGQPGG--PGGGPGEGFPGGG 95


>SPAC3G6.10c |||GARP complex subunit Vps51 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 159

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +3

Query: 6   DHSLGIASIDQLS*NVDDLYYSCYRFLLTCAIASAAECENATSL 137
           D SL +ASI  LS +   L Y+ Y+ LL  + A  + C+N  +L
Sbjct: 79  DKSL-VASIQGLSVDHRSLVYNHYKHLLEASDAINSFCKNLNTL 121


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = -1

Query: 794 PPGXPXTXPPPGXXAPXRXPXARAAXPGXKXGTXPP 687
           PPG      PPG  AP     A  A PG    T PP
Sbjct: 526 PPGMAL---PPGMPAPFPGYPAVPAMPGIPGATAPP 558


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,170,090
Number of Sequences: 5004
Number of extensions: 63786
Number of successful extensions: 172
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)