Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_E19
         (809 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces po...    29   1.0  
SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55 family|S...    26   7.3  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    25   9.6  

>SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 191 LTTRKLAERLGVQQPALYWHFRNKR 265
           +  +KLAE LG+ QP + WH    R
Sbjct: 210 MVQQKLAEELGLLQPEIAWHTERDR 234


>SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 19/68 (27%), Positives = 29/68 (42%)
 Frame = -2

Query: 235 RLLNPQPFRQFACRQTVYADLVQQVQGGTDHCIRLQLCHA*HFITDKHNMSTNLSSDKES 56
           R+L+P     F+      AD      GG+D CIRL      H + +K+       S + S
Sbjct: 230 RILSPIRSHDFSIETITRADSDSLYVGGSDGCIRLL-----HILPNKYERIIGQHSSR-S 283

Query: 55  APSTMDIT 32
               +D+T
Sbjct: 284 TVDAVDVT 291


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -2

Query: 295 HGFGQCVEQRPLVPEVPVKRRLLNPQPFRQ 206
           H F Q   +   +P++P    ++NP P R+
Sbjct: 296 HAFVQSPTENGTLPQLPKNESVVNPPPLRR 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,115,805
Number of Sequences: 5004
Number of extensions: 35081
Number of successful extensions: 82
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)