Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_E09
         (773 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...    49   6e-07
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...    49   6e-07
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    36   0.006
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    36   0.006
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.9  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 49.2 bits (112), Expect = 6e-07
 Identities = 19/29 (65%), Positives = 24/29 (82%)
 Frame = +1

Query: 49  FQHPXHGSMGFYPKKRSRRHRGKVKAFPE 135
           F+ P HGS+GF P+KR+ R RGKVKAFP+
Sbjct: 6   FEQPRHGSLGFLPRKRASRQRGKVKAFPK 34


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 49.2 bits (112), Expect = 6e-07
 Identities = 19/29 (65%), Positives = 24/29 (82%)
 Frame = +1

Query: 49  FQHPXHGSMGFYPKKRSRRHRGKVKAFPE 135
           F+ P HGS+GF P+KR+ R RGKVKAFP+
Sbjct: 6   FEQPRHGSLGFLPRKRASRQRGKVKAFPK 34


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 35.9 bits (79), Expect = 0.006
 Identities = 18/57 (31%), Positives = 19/57 (33%)
 Frame = +3

Query: 378 KXXPPPPXKXXXXXXKXGLXXPPXKXGGGXXPPPPXXXXXXXXPPPXXGXXXPPPPP 548
           K  PPPP        K  +            PPPP        P P  G   PPPPP
Sbjct: 309 KRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365



 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/38 (31%), Positives = 12/38 (31%)
 Frame = +1

Query: 436 PPPPXKXGGGXXXPPXXXXXXXXPPPXXXXXXXPPPPP 549
           PPP     G    PP        PPP         PPP
Sbjct: 341 PPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378



 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/56 (26%), Positives = 16/56 (28%), Gaps = 3/56 (5%)
 Frame = +3

Query: 390 PPPXKXXXXXXKXGLXXPPXKXGGGXXPPPPXXXXXXXXPPP---XXGXXXPPPPP 548
           PPP           +  PP        PPP         PPP         PP PP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPP 392


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 35.9 bits (79), Expect = 0.006
 Identities = 21/62 (33%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
 Frame = +3

Query: 369 IFFKXXPPPPXKXXXXXXKXGLXX--PPXKXGGGXXPPPPXXXXXXXXPPPXXGXXXPPP 542
           +  K  PPPP                PP    GG  PPPP        PPP      PPP
Sbjct: 727 LLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP-----PPPP 781

Query: 543 PP 548
           PP
Sbjct: 782 PP 783



 Score = 29.1 bits (62), Expect = 0.74
 Identities = 15/37 (40%), Positives = 15/37 (40%)
 Frame = +1

Query: 439 PPPXKXGGGXXXPPXXXXXXXXPPPXXXXXXXPPPPP 549
           PPP    GG   PP        PPP       PPPPP
Sbjct: 752 PPPAPIMGGPPPPP--------PPPGVAGAGPPPPPP 780



 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = +1

Query: 436 PPPPXKXGGGXXXPPXXXXXXXXPPPXXXXXXXPPPPP 549
           PPPP         P         PPP       PPPPP
Sbjct: 732 PPPPPP---AVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/36 (33%), Positives = 12/36 (33%)
 Frame = +3

Query: 441  PPXKXGGGXXPPPPXXXXXXXXPPPXXGXXXPPPPP 548
            PP        PPP         PP   G    PPPP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,679,396
Number of Sequences: 5004
Number of extensions: 29132
Number of successful extensions: 116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)