Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_E02
         (1063 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.36 
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    28   1.9  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   7.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.36
 Identities = 20/62 (32%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
 Frame = +1

Query: 466 PXPKTQP-PXXXGPPPPXNXXNXXGHXXGXXPPXXPKPXFXQXIPGGXXFFXXPPPGXXP 642
           P P   P P   GPPPP       G   G  PP  P P       GG  ++   P     
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAG--AGPPPPPPPPPAVS---AGGSRYYAPAPQAEPE 802

Query: 643 PK 648
           PK
Sbjct: 803 PK 804


>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 16/35 (45%), Positives = 16/35 (45%)
 Frame = -3

Query: 659 GXXFLGGXFPGGGXXKKXXPPGXFCXXXGFGXXGG 555
           G  F GG FPGGG       PG      GFG  GG
Sbjct: 438 GGSFPGGGFPGGGF------PGGSYNSQGFGMGGG 466


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 24/69 (34%), Positives = 25/69 (36%), Gaps = 9/69 (13%)
 Frame = -3

Query: 644 GGXFPGGGXXKKXXPPGX--FCXXXGFGXXGGXXP-----KXCPXXFXXXXG--GGGPXX 492
           GG F G G      PPG   F    GFG  G            P  F    G  GGGP  
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG 246

Query: 491 XGGWVLGXG 465
            GG + G G
Sbjct: 247 FGGGLGGFG 255


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,854,339
Number of Sequences: 5004
Number of extensions: 18228
Number of successful extensions: 21
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 559212080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)