Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_E01
         (865 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   2.1  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   8.4  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = +3

Query: 441 PPXPXXXSLAXXPPXARXPXPAPXTXPXTPPXXXP 545
           PP P   +++  PP    P   P T P  P    P
Sbjct: 418 PPIPNMSNMSGMPPLPNMPGSMP-TMPTMPSMAGP 451



 Score = 22.6 bits (46), Expect = 4.8
 Identities = 11/39 (28%), Positives = 12/39 (30%)
 Frame = +3

Query: 444 PXPXXXSLAXXPPXARXPXPAPXTXPXTPPXXXPFLXPS 560
           P P        P     P P+    P  PP   P   PS
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPS 61


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 79  MLTLLPNPXQTDNTALRVPWHMQ 147
           MLT+ P+   T + AL+ PW  Q
Sbjct: 150 MLTVNPSKRITASEALKHPWICQ 172


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,589
Number of Sequences: 438
Number of extensions: 1800
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)