Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_D24
         (823 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106589-3|AAT81179.1|  511|Caenorhabditis elegans Hypothetical ...    30   2.3  
AC006833-8|AAF60944.1|  360|Caenorhabditis elegans Hypothetical ...    29   3.0  
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin...    29   4.0  
Z35719-1|CAA84800.1|  296|Caenorhabditis elegans Hypothetical pr...    29   5.3  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   5.3  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   5.3  
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    29   5.3  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   5.3  
Z69360-4|CAC42291.2|  732|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z69360-3|CAA93286.2|  369|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z69360-2|CAA93285.2|  780|Caenorhabditis elegans Hypothetical pr...    28   7.0  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    28   7.0  
U14635-1|AAC46657.2|  448|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical pr...    28   9.3  
U41031-2|AAA82619.2|  615|Caenorhabditis elegans Hypothetical pr...    28   9.3  

>AF106589-3|AAT81179.1|  511|Caenorhabditis elegans Hypothetical
           protein Y44E3A.4 protein.
          Length = 511

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/47 (38%), Positives = 22/47 (46%)
 Frame = -3

Query: 590 GSEAGRRVRQAXRPRLQHGPPRVEPPRSNYTFAGAPFPPRAEVATPP 450
           G+  G   RQA    + H PP V PP+     A  P P +  VA PP
Sbjct: 259 GARHGSISRQATLTFVSHKPPPVNPPQP----AVPPKPAKISVADPP 301


>AC006833-8|AAF60944.1|  360|Caenorhabditis elegans Hypothetical
           protein ZK616.8 protein.
          Length = 360

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 24/92 (26%), Positives = 32/92 (34%), Gaps = 1/92 (1%)
 Frame = -3

Query: 485 PFPPRAE-VATPPVIGSERLRLQVPGWRPGKQARRLEGDGAVSSDRPDRDRTLRTSQSRD 309
           PF P  +  +TPPV    R RLQ        Q    E D  V    P+  R  + + S  
Sbjct: 227 PFSPSKQPTSTPPVSEGNRKRLQTKVVERSNQIES-EMDSFVKKIEPNERRATQYNHSNS 285

Query: 308 VLAGQGVAPYGSXXXXXXXXXXXVEAARHLIG 213
           +       P G+           +   R LIG
Sbjct: 286 LSGSNEAVPPGNVKRSPQKATHPIRTTRSLIG 317


>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
           protein protein16, isoform d protein.
          Length = 1030

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 18/83 (21%), Positives = 30/83 (36%)
 Frame = -3

Query: 665 P*HWYRXEHPRXAHPVRENRADRLDGSEAGRRVRQAXRPRLQHGPPRVEPPRSNYTFAGA 486
           P HW   +    A       +  ++ S      +Q   P  QH PP   PP    T    
Sbjct: 64  PLHWQLRKDFHLAKYSERRASYHVESSSYIHSSQQIQHPPQQHHPPPPSPPPVAETIQHQ 123

Query: 485 PFPPRAEVATPPVIGSERLRLQV 417
           P P + + +T  +   +  + Q+
Sbjct: 124 PHPSQQQPSTTTISSRQLYKSQL 146


>Z35719-1|CAA84800.1|  296|Caenorhabditis elegans Hypothetical
           protein F17C8.2 protein.
          Length = 296

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
 Frame = +2

Query: 155 PSTDGDGRLSEPAASKRRGSRSGGAPPLHGGGAVDGTIRGSRMVPRPD-PQERRGSATSA 331
           P  DG+    EP  +   G    G PP   GGA      GS   P P  P  + G+  +A
Sbjct: 206 PGKDGEKGKGEPGPAGPPGPPGPGGPPGDAGGA------GSDGAPGPQGPPGQDGTPGNA 259

Query: 332 ACDRGQGDPRIP 367
             D   G P  P
Sbjct: 260 GPDGQPGSPGGP 271


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/50 (32%), Positives = 18/50 (36%)
 Frame = -3

Query: 551 PRLQHGPPRVEPPRSNYTFAGAPFPPRAEVATPPVIGSERLRLQVPGWRP 402
           P +  GPP   PP       G P PP      PP+ G        PG  P
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 769


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/50 (32%), Positives = 18/50 (36%)
 Frame = -3

Query: 551 PRLQHGPPRVEPPRSNYTFAGAPFPPRAEVATPPVIGSERLRLQVPGWRP 402
           P +  GPP   PP       G P PP      PP+ G        PG  P
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 769


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 246 VVRSMALYGAPVWCHALTRKNVAALRRPQRAIAVRAIRG 362
           +++  ALYGAP W   L+  N+  L    R+ A+RA  G
Sbjct: 689 LIKPTALYGAPAWTSLLSDTNLEKLEIAYRS-ALRACVG 726


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/50 (32%), Positives = 18/50 (36%)
 Frame = -3

Query: 551 PRLQHGPPRVEPPRSNYTFAGAPFPPRAEVATPPVIGSERLRLQVPGWRP 402
           P +  GPP   PP       G P PP      PP+ G        PG  P
Sbjct: 303 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 352


>Z69360-4|CAC42291.2|  732|Caenorhabditis elegans Hypothetical
           protein F25H8.5c protein.
          Length = 732

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = -3

Query: 617 RENRADRLDGSEAGRRVRQAXRPRLQHGPPRVEPPRSNYTFAGAPFPPRAEVATP 453
           R+  A+    +EA  R R+  R R     P   PPR+N      P PP  +   P
Sbjct: 63  RQQSAEERARAEADARRRERCRNRRPQPTPGPPPPRNNCLPPPGPPPPCQQYQQP 117


>Z69360-3|CAA93286.2|  369|Caenorhabditis elegans Hypothetical
           protein F25H8.5b protein.
          Length = 369

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = -3

Query: 617 RENRADRLDGSEAGRRVRQAXRPRLQHGPPRVEPPRSNYTFAGAPFPPRAEVATP 453
           R+  A+    +EA  R R+  R R     P   PPR+N      P PP  +   P
Sbjct: 63  RQQSAEERARAEADARRRERCRNRRPQPTPGPPPPRNNCLPPPGPPPPCQQYQQP 117


>Z69360-2|CAA93285.2|  780|Caenorhabditis elegans Hypothetical
           protein F25H8.5a protein.
          Length = 780

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = -3

Query: 617 RENRADRLDGSEAGRRVRQAXRPRLQHGPPRVEPPRSNYTFAGAPFPPRAEVATP 453
           R+  A+    +EA  R R+  R R     P   PPR+N      P PP  +   P
Sbjct: 63  RQQSAEERARAEADARRRERCRNRRPQPTPGPPPPRNNCLPPPGPPPPCQQYQQP 117


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 9/85 (10%)
 Frame = -3

Query: 701 AGAVSFXYGEHMP*HWYRXEH-PRXAHP--VRENRADRLDGSEA-GRRVRQAXRPRLQHG 534
           A +++  YG + P + Y+  H P  AHP  ++        G    G+   Q   P  QHG
Sbjct: 59  AASIAHTYGGYPPPYPYQHPHQPPPAHPHHLQHPHPYAYPGYPVPGQEGHQVPAP--QHG 116

Query: 533 -----PPRVEPPRSNYTFAGAPFPP 474
                PP   PPR +     +P PP
Sbjct: 117 DHEASPPPPPPPRKSRAGGSSPPPP 141


>U14635-1|AAC46657.2|  448|Caenorhabditis elegans Hypothetical
           protein C27H5.3 protein.
          Length = 448

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = +2

Query: 152 GPSTDGDGRLSEPAASKRRGSRSGGAPPLHGGGAVDGTIRGSR 280
           G  + G    S+P    R G R GG     GGG  DG   GSR
Sbjct: 70  GQGSGGQSGGSDPYGQSRGGGR-GGFGGSRGGGGYDGGRGGSR 111


>Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical
           protein F26C11.3 protein.
          Length = 1317

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = -2

Query: 186 SESRPSPSVEGPTSQSERGSSTDYPVRGRGTEDRSPQPRRGRLRSXRWAPTGGARP 19
           SE +PS S   PTS S   SST  P+    +   + Q       +   + T G+ P
Sbjct: 349 SEDKPSSSTTVPTSASTSESSTSSPMAETSSSSTTSQSSPASTSTVPESSTVGSTP 404


>U41031-2|AAA82619.2|  615|Caenorhabditis elegans Hypothetical
           protein C16B8.2 protein.
          Length = 615

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = -3

Query: 161 SRAQLLKVSAEVPPTIQFEAEVP---KTGHPNPDADASD 54
           S++ + K+  E+PPT+      P   KT  PNPD DAS+
Sbjct: 359 SQSHIKKIHLEMPPTLLPHRRKPKKMKTTTPNPD-DASE 396


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,756,503
Number of Sequences: 27780
Number of extensions: 320764
Number of successful extensions: 1205
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1200
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)