Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_D23
         (830 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    28   1.9  
SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces po...    26   7.5  
SPCC11E10.04 |||mitochondrial ATPase expression protein homolog|...    25   10.0 
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    25   10.0 

>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = -1

Query: 701 PKNAITNITAPTTMKIHGP-TARWXFSKS--LTMVQFIRNATPIPTSSRPRSFFGIVGDS 531
           P+N  T IT+PT +    P T+    + S  +T    +  +TPI +SS   S   I   S
Sbjct: 365 PENTSTQITSPTAVNSSTPITSSSVLNSSTPITSSSILNTSTPITSSSVLNSSTPITSSS 424

Query: 530 NSSSS 516
             +SS
Sbjct: 425 ILNSS 429


>SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 361

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 719 RIAPQHPKNAITNITAPTTMKIHG 648
           RI P  P N + NIT P+T+  HG
Sbjct: 175 RIFP--PTNLVANITLPSTLHPHG 196


>SPCC11E10.04 |||mitochondrial ATPase expression protein
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 443

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 44  NDTRNHVSPSSCVASNLLRCSTCGPLA 124
           +D++  +  +S +ASNLLR S+ G L+
Sbjct: 38  SDSQKFIPSASPIASNLLRVSSYGKLS 64


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 372 TASCLTAFAASSAQLYHMRLYESPLPS 292
           T +CLT+    S++L HM  +   LPS
Sbjct: 469 TFACLTSKQLVSSELLHMTTFTQSLPS 495


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,773,608
Number of Sequences: 5004
Number of extensions: 49233
Number of successful extensions: 162
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)