Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_D23
         (830 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical pr...    47   1e-05
AL132948-5|CAC51071.1|  321|Caenorhabditis elegans Hypothetical ...    39   0.005
U41028-2|AAA82355.1|  233|Caenorhabditis elegans Tetraspanin fam...    38   0.007
Z92824-4|CAB07307.2|  395|Caenorhabditis elegans B0413.2 protein.      36   0.027
U28740-6|AAA68322.4|  317|Caenorhabditis elegans Tetraspanin fam...    33   0.33 
Z68880-6|CAA93092.1|  308|Caenorhabditis elegans Hypothetical pr...    32   0.44 
Z69790-4|CAA93655.1|  282|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U41545-5|AAK39137.2|  243|Caenorhabditis elegans Tetraspanin fam...    30   1.8  
Z81106-3|CAB03222.1|   84|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AC087079-1|AAK27872.1|  402|Caenorhabditis elegans Hypothetical ...    29   5.4  
AF024502-5|AAB70376.1|  456|Caenorhabditis elegans Hypothetical ...    28   7.1  
AL023853-1|CAA19558.1|  370|Caenorhabditis elegans Hypothetical ...    28   9.4  

>Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical
           protein T23D8.2 protein.
          Length = 232

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 18/46 (39%), Positives = 31/46 (67%)
 Frame = +1

Query: 613 VKDLLKXHLAVGPWIFIVVGAVMFVIAFLGCCGAIRXSHCMVVTYA 750
           V D+L       P + +V+G++  ++ FLGCCGAIR ++C+ V++A
Sbjct: 41  VLDILGDERLATPILLLVIGSLCTLLGFLGCCGAIRENYCLTVSFA 86


>AL132948-5|CAC51071.1|  321|Caenorhabditis elegans Hypothetical
           protein Y39B6A.6 protein.
          Length = 321

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = +1

Query: 652 WIFIVVGAVMFVIAFLGCCGAIRXSHCMVVTYA 750
           +I IV+GAVM V+A LGCCG    S   ++ Y+
Sbjct: 115 YIIIVLGAVMMVVAMLGCCGITGRSRPFLIIYS 147


>U41028-2|AAA82355.1|  233|Caenorhabditis elegans Tetraspanin family
           protein 9 protein.
          Length = 233

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = +1

Query: 652 WIFIVVGAVMFVIAFLGCCGA 714
           WI + VGA++F++ F GCCGA
Sbjct: 69  WILVAVGALLFLVGFFGCCGA 89


>Z92824-4|CAB07307.2|  395|Caenorhabditis elegans B0413.2 protein.
          Length = 395

 Score = 36.3 bits (80), Expect = 0.027
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +1

Query: 652 WIFIVVGAVMFVIAFLGCCGAIRXSHCMVVTYA 750
           +I IV+GAVM V+A  GCCG    S   ++ Y+
Sbjct: 226 YIXIVLGAVMMVVAMXGCCGITGRSRPFLIIYS 258


>U28740-6|AAA68322.4|  317|Caenorhabditis elegans Tetraspanin family
           protein 11 protein.
          Length = 317

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 652 WIFIVVGAVMFVIAFLGCCGAIRXSHCMVVTYA 750
           ++  V G ++ V+AFLGCCGA +    ++  Y+
Sbjct: 84  YLLFVGGFIVIVVAFLGCCGAAKEWRPLLCCYS 116


>Z68880-6|CAA93092.1|  308|Caenorhabditis elegans Hypothetical
           protein T14G10.6 protein.
          Length = 308

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 652 WIFIVVGAVMFVIAFLGCCGAIRXSHCMVVTYA 750
           W  ++VG + F+I F GC G++R +   +  Y+
Sbjct: 86  WPLLIVGFLTFIIGFSGCVGSLRENTSFLTFYS 118


>Z69790-4|CAA93655.1|  282|Caenorhabditis elegans Hypothetical
           protein F33C8.3 protein.
          Length = 282

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = +1

Query: 652 WIFIVVGAVMFVIAFLGCCGAIRXSHCMVVTY 747
           W  +  GA++ ++ + GC GA + + C +  +
Sbjct: 58  WFLVGAGAIIILVGYFGCIGAWKMNQCALAFF 89


>U41545-5|AAK39137.2|  243|Caenorhabditis elegans Tetraspanin family
           protein 17 protein.
          Length = 243

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +1

Query: 637 LAVGPWIFIVVGAVMFVIAFLGCCGAIRXSHCMVVTY 747
           L    ++ +V G    ++ FLG CGA+  S  +++ +
Sbjct: 23  LKASAYVSLVCGCAQLLVGFLGLCGAVNRSRFLLLAF 59


>Z81106-3|CAB03222.1|   84|Caenorhabditis elegans Hypothetical
           protein R06C1.4 protein.
          Length = 84

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 447 HFFFCSTHCNSIRVVADNDTGRP 379
           ++F    H N++R+V D +TGRP
Sbjct: 24  NYFAAVGHVNNVRIVYDRETGRP 46


>AC087079-1|AAK27872.1|  402|Caenorhabditis elegans Hypothetical
           protein Y37E3.1 protein.
          Length = 402

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -1

Query: 689 ITNITAPTTMKIHGPTARWXFSKSLTMVQFIRNATPIPTSSRPRS 555
           I N+T P+  +IH  + +W   +  T  Q  +N  P+P S   R+
Sbjct: 353 IKNLTIPSDPEIHVDSVKWI--RVATPTQMKKNGVPLPESVLARA 395


>AF024502-5|AAB70376.1|  456|Caenorhabditis elegans Hypothetical
           protein M151.5 protein.
          Length = 456

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 450 IHFFFCSTHCNSI-RVVADNDTGRPDRTASCLTAFAA 343
           + FF  + HC  + RV+   +  +PDRT   + A+ A
Sbjct: 9   LFFFIFAVHCQIVTRVILFKNANQPDRTEELVKAYLA 45


>AL023853-1|CAA19558.1|  370|Caenorhabditis elegans Hypothetical
           protein Y71A12C.1 protein.
          Length = 370

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 315 GACGRAGQKRQRRL*DKRPYGQDA 386
           G CG  G +   RL  K PYG+D+
Sbjct: 347 GVCGEGGVREGERLEFKTPYGRDS 370


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,216,004
Number of Sequences: 27780
Number of extensions: 303176
Number of successful extensions: 1219
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1219
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)