Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_D19
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    32   0.11 
SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces pomb...    27   4.0  
SPCC330.10 |pcm1||mRNA capping methyltransferase|Schizosaccharom...    25   9.2  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    25   9.2  
SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein S14|Sc...    25   9.2  
SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein S14|Schizosa...    25   9.2  

>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -3

Query: 117 SKETNATTNRLKKKHGWPLRLPTMPSVAPSPSRRNSSTV 1
           SK    + +  KKK+G P+    +PS++PSPS  N S +
Sbjct: 41  SKRLKRSYSATKKKNGNPVLESAIPSLSPSPSIENGSAM 79


>SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -3

Query: 141 IEGSPIITSKETNATTNRLKKKHGWPLRLPTMPSVA-PSPSRRNSSTV 1
           ++G   +T K+TN TT    K      ++   PSV+  S SR   STV
Sbjct: 197 VDGDSPLTEKDTNLTTPATLKASDQQRKVLEKPSVSKQSSSRTRLSTV 244


>SPCC330.10 |pcm1||mRNA capping
           methyltransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 389

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -1

Query: 368 HPRSRPTQSARTGRTASTVRRPADGSAKRRDHASSTD 258
           H    PT++ R  R  + + R  +   +RRD+  + D
Sbjct: 38  HEEQPPTENRRYARPTAQMNRVIEQQPRRRDYFQNND 74


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -3

Query: 249  LEPPRSNYSFAGAPFPPCVPTN 184
            L PPRS  S +G P P   P N
Sbjct: 1020 LLPPRSGSSSSGVPAPNLTPVN 1041


>SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein
           S14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 119 RARKPTPLPTDSKRSMGGPYG 57
           R    TP+PTDS R  GG  G
Sbjct: 116 RIEDVTPIPTDSTRRKGGRRG 136


>SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein
           S14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 119 RARKPTPLPTDSKRSMGGPYG 57
           R    TP+PTDS R  GG  G
Sbjct: 116 RIEDVTPIPTDSTRRKGGRRG 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,464,868
Number of Sequences: 5004
Number of extensions: 42197
Number of successful extensions: 130
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)