Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_D19
(776 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0822 + 28352941-28353825,28353863-28354016,28354714-283547... 33 0.33
09_04_0379 - 17094540-17094868,17095354-17095717 30 2.4
07_01_0217 + 1620625-1621419,1621982-1622152,1622581-1622865,162... 29 5.4
01_06_0353 - 28647452-28647477,28647568-28649134 29 5.4
01_01_0164 + 1403635-1403708,1403960-1403999,1404103-1404178,140... 29 5.4
06_03_1501 + 30612643-30613310,30613396-30613501,30613732-306139... 28 7.2
05_07_0057 - 27386081-27386164,27386317-27386379,27386584-273866... 28 7.2
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 28 7.2
01_01_0690 - 5306754-5307047,5307107-5307279,5308223-5308370,530... 28 7.2
12_02_1149 - 26467252-26468319,26468452-26469147,26469263-264694... 28 9.5
11_06_0542 + 24777453-24777632,24777654-24778478,24778576-247793... 28 9.5
07_03_1626 + 28223967-28225294,28225506-28225779,28225939-282262... 28 9.5
07_01_0664 + 4979892-4979931,4980040-4980236,4982340-4982723,498... 28 9.5
>04_04_0822 +
28352941-28353825,28353863-28354016,28354714-28354754,
28355060-28355310,28355411-28355591,28356138-28356323,
28356396-28356569,28356992-28357150,28357424-28357501,
28357612-28357748,28357980-28358044,28358115-28358148,
28358216-28358372,28359135-28359196,28360041-28360118,
28360940-28361042
Length = 914
Score = 32.7 bits (71), Expect = 0.33
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -3
Query: 306 AGRRVRQAARPRLQHGPP-RLEPPRSNYSFAGAPFPPCVPTNFLDGKDE 163
AG+ R RP+ QH PP R PPR ++ + P + D D+
Sbjct: 83 AGKSTRVLNRPQRQHSPPGRALPPRESFRYNPKPAKAAAAVSVSDDDDD 131
>09_04_0379 - 17094540-17094868,17095354-17095717
Length = 230
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 395 NICVSRKVRHPRSRPTQSARTGRTASTVRRPADG 294
N + R++RH +PT AR G + +PA G
Sbjct: 176 NRAIPRRIRHDLEKPTDGARAGGRKRGIGKPAFG 209
>07_01_0217 +
1620625-1621419,1621982-1622152,1622581-1622865,
1623113-1623262
Length = 466
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = -3
Query: 393 HLRQPEGEASAVAAHPVRENRADRLDGTEAGRRVRQAARPRLQ 265
HLR P G A A A ++ R+DG E GR V PRL+
Sbjct: 106 HLRPPPGGAFAALATATIQSC--RVDGGELGRLVSSPQCPRLE 146
>01_06_0353 - 28647452-28647477,28647568-28649134
Length = 530
Score = 28.7 bits (61), Expect = 5.4
Identities = 27/87 (31%), Positives = 37/87 (42%)
Frame = -3
Query: 399 GQHLRQPEGEASAVAAHPVRENRADRLDGTEAGRRVRQAARPRLQHGPPRLEPPRSNYSF 220
G HLR+P + A P R A D R R+ A ++ RL P +++S
Sbjct: 27 GPHLRRP------LRAAPHRARCAS--DAATTATRHRRPAEENIREEAARLRGPGNDFSA 78
Query: 219 AGAPFPPCVPTNFLDGKDEVACLIEII 139
PFPP P D DE L E++
Sbjct: 79 WYVPFPP-TPE---DDPDERYSLDEVV 101
>01_01_0164 +
1403635-1403708,1403960-1403999,1404103-1404178,
1404680-1405827
Length = 445
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -2
Query: 172 KG*SCMSHR-DNRRQSYNYEQGNQRHYQQTQKE 77
KG S H+ N +Q +QG Q+H QQ QK+
Sbjct: 106 KGGSNQGHKGSNNQQKQQQQQGQQQHGQQHQKQ 138
>06_03_1501 +
30612643-30613310,30613396-30613501,30613732-30613934,
30614211-30614502
Length = 422
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +1
Query: 310 RTVEAVRPVLADWVGRDRGCLTFRLTQMLTGHGCFGRYLFKIAGREPTA 456
+ VE + LADWV + G T TG C+G L + ++P+A
Sbjct: 190 KNVEMLSEHLADWVSEEDGKKIVFHTFSNTGWLCYGVILENLQRQDPSA 238
>05_07_0057 -
27386081-27386164,27386317-27386379,27386584-27386637,
27386768-27386881,27386965-27387192
Length = 180
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -3
Query: 156 CLIEIIEGSPIITSKETNATTNRLKKK-HGWPLRLPTM 46
C++EI++G ++ ++ TN LKKK W L T+
Sbjct: 129 CIVEIVDGKELL-NERTNTENRYLKKKPESWRLACQTI 165
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 28.3 bits (60), Expect = 7.2
Identities = 21/82 (25%), Positives = 31/82 (37%)
Frame = -3
Query: 444 PSGYFEKVPAKTTMAGQHLRQPEGEASAVAAHPVRENRADRLDGTEAGRRVRQAARPRLQ 265
P+G K +M Q +R E + +A EN+ + + A V A ++
Sbjct: 214 PAGVGSMSMNKVSMQSQAMRMSSHEITTIAGAGRVENKVSTIAPSAAAAAVASAGGGQVP 273
Query: 264 HGPPRLEPPRSNYSFAGAPFPP 199
PP PP A P PP
Sbjct: 274 AAPP---PPAGPPPPAPPPLPP 292
>01_01_0690 -
5306754-5307047,5307107-5307279,5308223-5308370,
5309110-5309356,5309694-5309839,5312482-5312707,
5313652-5313874,5314054-5314202,5315345-5315514,
5316064-5316135,5317610-5317741,5317813-5317900,
5319440-5319656,5320123-5320306,5320644-5320727,
5321148-5321242,5321519-5321562,5321707-5322367,
5323053-5323356
Length = 1218
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -1
Query: 119 RARKPTPLPTDSK--RSMGGPYGCLQCQVWLLPQ 24
R P+P+ S+ +M GP G C +W++PQ
Sbjct: 248 RVSTPSPVRDLSRCVENMAGPSGSPPCPIWVMPQ 281
>12_02_1149 -
26467252-26468319,26468452-26469147,26469263-26469409,
26470936-26471274
Length = 749
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -3
Query: 261 GPPRLEPPRSNYSFAGAPFPPCVPTNFLDGKDEVACLIE 145
GPP P S S AP P + KDEV+ +I+
Sbjct: 171 GPPHQSPDASQRSAVTAPLSPSSGDSVPSSKDEVSSVIK 209
>11_06_0542 +
24777453-24777632,24777654-24778478,24778576-24779319,
24779422-24780354,24780456-24780938,24780969-24781082,
24781240-24781636,24781732-24782024,24782392-24782802
Length = 1459
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 300 RRVRQAARPRLQHGPPRLEPPRSNYSFAGAP 208
++V+Q L H PP PPR++ SF G P
Sbjct: 605 QKVKQQVLQGLHHRPPP-HPPRADRSFKGEP 634
>07_03_1626 +
28223967-28225294,28225506-28225779,28225939-28226230,
28226492-28226651,28226809-28226917,28227004-28227099
Length = 752
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = -3
Query: 366 SAVAAHPVRENRADRLDGTEAGRRVRQAARPRLQHGPPRLEPPRSNYSFAG 214
+A AA P R A+ T+ R R +ARP PPR P ++ S AG
Sbjct: 9 AAAAAFPFRLFSAEARRNTKGSRSKRGSARPLKPSPPPR---PSASSSAAG 56
>07_01_0664 +
4979892-4979931,4980040-4980236,4982340-4982723,
4983499-4983549,4983659-4983741,4983818-4983917,
4984410-4984488,4984957-4985080,4985605-4985711,
4985810-4985938,4987004-4987089,4987200-4987367,
4987477-4987637,4987721-4987752,4987866-4988047,
4988386-4988465,4988885-4988950,4989060-4989349,
4990433-4990540,4991521-4991618,4991680-4991782,
4992269-4992345,4992449-4992520,4992579-4992670,
4992909-4992989,4993290-4993392,4994334-4994492,
4994696-4995085
Length = 1213
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -3
Query: 261 GPPRLEPPRSNYSFAGA-PFPPCVPTNFLDG 172
GPP + PP + Y + A P PP FL+G
Sbjct: 23 GPPVMAPPHAQYQYQYAQPPPPPRQPGFLEG 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,822,332
Number of Sequences: 37544
Number of extensions: 378548
Number of successful extensions: 1493
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1491
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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