Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_D19
(776 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69360-4|CAC42291.2| 732|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z69360-3|CAA93286.2| 369|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z69360-2|CAA93285.2| 780|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z83220-4|CAC42264.1| 617|Caenorhabditis elegans Hypothetical pr... 30 2.1
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z82269-3|CAB05207.2| 1319|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z82269-2|CAJ76945.1| 1129|Caenorhabditis elegans Hypothetical pr... 29 2.8
AL132860-5|CAB60515.1| 798|Caenorhabditis elegans Hypothetical ... 29 4.9
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 29 4.9
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 29 4.9
Z68297-2|CAA92594.3| 522|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z92773-4|CAB07130.2| 584|Caenorhabditis elegans Hypothetical pr... 28 8.6
Z81114-8|CAB97236.1| 584|Caenorhabditis elegans Hypothetical pr... 28 8.6
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 28 8.6
AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein. 28 8.6
AF003135-4|AAO38590.1| 1039|Caenorhabditis elegans Hypothetical ... 28 8.6
AF003135-3|AAO38589.1| 1184|Caenorhabditis elegans Hypothetical ... 28 8.6
AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical ... 28 8.6
AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical ... 28 8.6
>Z69360-4|CAC42291.2| 732|Caenorhabditis elegans Hypothetical
protein F25H8.5c protein.
Length = 732
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = -3
Query: 342 RENRADRLDGTEAGRRVRQAARPRLQHGPPRLEPPRSNYSFAGAPFPPC 196
R+ A+ EA R R+ R R P PPR+N P PPC
Sbjct: 63 RQQSAEERARAEADARRRERCRNRRPQPTPGPPPPRNNCLPPPGPPPPC 111
>Z69360-3|CAA93286.2| 369|Caenorhabditis elegans Hypothetical
protein F25H8.5b protein.
Length = 369
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = -3
Query: 342 RENRADRLDGTEAGRRVRQAARPRLQHGPPRLEPPRSNYSFAGAPFPPC 196
R+ A+ EA R R+ R R P PPR+N P PPC
Sbjct: 63 RQQSAEERARAEADARRRERCRNRRPQPTPGPPPPRNNCLPPPGPPPPC 111
>Z69360-2|CAA93285.2| 780|Caenorhabditis elegans Hypothetical
protein F25H8.5a protein.
Length = 780
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = -3
Query: 342 RENRADRLDGTEAGRRVRQAARPRLQHGPPRLEPPRSNYSFAGAPFPPC 196
R+ A+ EA R R+ R R P PPR+N P PPC
Sbjct: 63 RQQSAEERARAEADARRRERCRNRRPQPTPGPPPPRNNCLPPPGPPPPC 111
>Z83220-4|CAC42264.1| 617|Caenorhabditis elegans Hypothetical
protein C34B7.4 protein.
Length = 617
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/57 (24%), Positives = 31/57 (54%)
Frame = -3
Query: 429 EKVPAKTTMAGQHLRQPEGEASAVAAHPVRENRADRLDGTEAGRRVRQAARPRLQHG 259
++ P+ ++ ++LR+P + + ++ P+ ++ +RLD TE R L+HG
Sbjct: 32 QQTPSSSSSKRKNLRKPSTDDTPSSSEPL--SKKNRLDSTETAEEDNTRRRRTLKHG 86
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical protein
C01G8.9a protein.
Length = 1724
Score = 29.9 bits (64), Expect = 2.1
Identities = 32/120 (26%), Positives = 44/120 (36%), Gaps = 3/120 (2%)
Frame = -3
Query: 354 AHPVRENRADRLDGTEAGRRVRQAARPRLQHGPPRLEPPRSNYSFAGAPFPPCVPTNFLD 175
+HP A L + +Q + + Q G P PR Y + G P PP P N +
Sbjct: 771 SHPQHPQHAQYLAWQQQRYHQQQQHQQQQQQGAPG--GPRPPYPYPGGPVPPGPPQNRMP 828
Query: 174 GKDEVACLIEIIEGSPIITSKETNATTNRLKKKHGWPLRLP---TMPSVAPSPSRRNSST 4
A G+ K+ T + P P TMP VAPS S + + T
Sbjct: 829 -PPPPAQGAPSPSGAAGSNGKQPRYGTPAPPSRASAPTPQPLSSTMPVVAPSTSTQPTPT 887
>Z82269-3|CAB05207.2| 1319|Caenorhabditis elegans Hypothetical protein
F52G2.2a protein.
Length = 1319
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -3
Query: 291 RQAARPRLQHGPPR-LEPPRSNYSFAGAPFPP 199
+Q+ +PR P L PP S SF GAP PP
Sbjct: 1221 QQSYQPRYNGAPSGPLPPPSSQSSFNGAPAPP 1252
>Z82269-2|CAJ76945.1| 1129|Caenorhabditis elegans Hypothetical protein
F52G2.2b protein.
Length = 1129
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -3
Query: 291 RQAARPRLQHGPPR-LEPPRSNYSFAGAPFPP 199
+Q+ +PR P L PP S SF GAP PP
Sbjct: 1031 QQSYQPRYNGAPSGPLPPPSSQSSFNGAPAPP 1062
>AL132860-5|CAB60515.1| 798|Caenorhabditis elegans Hypothetical
protein Y56A3A.6 protein.
Length = 798
Score = 28.7 bits (61), Expect = 4.9
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Frame = -3
Query: 387 RQPEGEASAVAAHP---VRENRADRLDGTEAGRRVRQAARPRLQHGPPRLEPPRSNYSFA 217
R E +AS + P + E +A + G E + A P ++ PP+L R
Sbjct: 386 RALESQASPRKSSPGPRMVEYKAMKSPGLEPDGVYEEIAPPIPKNPPPKLSDYRKEQQTV 445
Query: 216 GAPFPPCVPTN 184
AP P VPTN
Sbjct: 446 VAPRMPSVPTN 456
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = -3
Query: 276 PRLQHGPPR-LEPPRSNYSFAGAPFPPCVP 190
P GPPR PP F G P+PP P
Sbjct: 325 PHFGMGPPRGFMPPPHPMMFRGGPYPPFFP 354
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = -3
Query: 276 PRLQHGPPR-LEPPRSNYSFAGAPFPPCVP 190
P GPPR PP F G P+PP P
Sbjct: 325 PHFGMGPPRGFMPPPHPMMFRGGPYPPFFP 354
>Z68297-2|CAA92594.3| 522|Caenorhabditis elegans Hypothetical
protein F11A10.3 protein.
Length = 522
Score = 28.3 bits (60), Expect = 6.5
Identities = 19/59 (32%), Positives = 24/59 (40%)
Frame = -3
Query: 180 LDGKDEVACLIEIIEGSPIITSKETNATTNRLKKKHGWPLRLPTMPSVAPSPSRRNSST 4
+DG+ E P K T + KKK P PT PS +PS S S+T
Sbjct: 96 IDGEVENGITSREHSPDPSTFKKTAKLQTKKKKKKESPPETPPTSPSPSPSRSVSPSTT 154
>Z92773-4|CAB07130.2| 584|Caenorhabditis elegans Hypothetical
protein W08E3.2 protein.
Length = 584
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = -1
Query: 377 KVRHPRSRPTQSARTGRTASTVRRPADGSAK-RRDHASSTDRRDWS 243
++ HP P +S+ ++++ RRP + S++ SS+ RRD+S
Sbjct: 304 RMSHPMGPPRRSSGAPPSSASNRRPVESSSRGPPPPPSSSSRRDYS 349
>Z81114-8|CAB97236.1| 584|Caenorhabditis elegans Hypothetical
protein W08E3.2 protein.
Length = 584
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = -1
Query: 377 KVRHPRSRPTQSARTGRTASTVRRPADGSAK-RRDHASSTDRRDWS 243
++ HP P +S+ ++++ RRP + S++ SS+ RRD+S
Sbjct: 304 RMSHPMGPPRRSSGAPPSSASNRRPVESSSRGPPPPPSSSSRRDYS 349
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -1
Query: 371 RHPRSRPTQSARTGRTASTVRR--PADGSAKRRDHASSTDRRDWSLRA 234
R RSR + +R R+ S+ R P S +R + S + +RD LRA
Sbjct: 104 RRSRSRDRKRSRRSRSRSSSRSRSPVRESRRRSESRSPSPKRDLQLRA 151
>AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein.
Length = 1666
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -2
Query: 163 SCMSHRDNRRQSYNYEQGNQRHYQQTQKEAWVALTAAYNAKC 38
S S + N+ S N NQRH+QQ +A + A A+C
Sbjct: 456 STSSSQANQINSTNISNSNQRHFQQQTFYPEMADSRASTARC 497
>AF003135-4|AAO38590.1| 1039|Caenorhabditis elegans Hypothetical
protein W03F11.6e protein.
Length = 1039
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -2
Query: 163 SCMSHRDNRRQSYNYEQGNQRHYQQTQKEAWVALTAAYNAKC 38
S S + N+ S N NQRH+QQ +A + A A+C
Sbjct: 454 STSSSQANQINSTNISNSNQRHFQQQTFYPEMADSRASTARC 495
>AF003135-3|AAO38589.1| 1184|Caenorhabditis elegans Hypothetical
protein W03F11.6d protein.
Length = 1184
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -2
Query: 163 SCMSHRDNRRQSYNYEQGNQRHYQQTQKEAWVALTAAYNAKC 38
S S + N+ S N NQRH+QQ +A + A A+C
Sbjct: 454 STSSSQANQINSTNISNSNQRHFQQQTFYPEMADSRASTARC 495
>AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical
protein W03F11.6c protein.
Length = 1419
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -2
Query: 163 SCMSHRDNRRQSYNYEQGNQRHYQQTQKEAWVALTAAYNAKC 38
S S + N+ S N NQRH+QQ +A + A A+C
Sbjct: 454 STSSSQANQINSTNISNSNQRHFQQQTFYPEMADSRASTARC 495
>AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical
protein W03F11.6a protein.
Length = 1658
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -2
Query: 163 SCMSHRDNRRQSYNYEQGNQRHYQQTQKEAWVALTAAYNAKC 38
S S + N+ S N NQRH+QQ +A + A A+C
Sbjct: 454 STSSSQANQINSTNISNSNQRHFQQQTFYPEMADSRASTARC 495
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,266,090
Number of Sequences: 27780
Number of extensions: 277016
Number of successful extensions: 973
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -