Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_D15
(810 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0976 - 23222557-23222559,23223028-23223109,23223218-232232... 53 3e-07
05_07_0260 - 28739035-28739085,28739316-28739596,28740545-287405... 33 0.20
06_03_1344 - 29472139-29473292,29474478-29475386,29475504-294756... 33 0.36
01_06_1656 + 38946922-38947542,38947640-38947739,38948045-389481... 30 1.9
04_04_0624 + 26676765-26676879,26676955-26677093,26678012-266780... 30 2.5
04_03_0965 - 21296608-21297165,21297332-21297682,21297781-212979... 30 2.5
12_02_0352 - 17862577-17863528,17864076-17864827 29 4.4
04_01_0622 - 8175226-8175312,8175674-8175763,8176370-8176457,817... 29 4.4
12_01_0830 - 7678038-7678444,7678996-7680943,7681231-7681983,768... 29 5.8
01_05_0788 + 25223373-25223405,25224285-25224373,25224496-252246... 29 5.8
10_07_0165 + 13740611-13740706,13741159-13741215,13741523-137416... 28 7.6
>08_02_0976 -
23222557-23222559,23223028-23223109,23223218-23223258,
23223362-23223406,23223498-23223641
Length = 104
Score = 52.8 bits (121), Expect = 3e-07
Identities = 21/50 (42%), Positives = 33/50 (66%)
Frame = +3
Query: 204 LLTRIPHYKNVVIMSFSCEECGYQNNEIQPGGEYEELGVRWKLRVESQQD 353
L+T IPH++ VV+M+F C CG +NNE+Q G+ + G ++L V Q+
Sbjct: 54 LMTMIPHFREVVLMAFECPHCGERNNEVQFAGQLQPKGCCYRLEVPRGQN 103
>05_07_0260 -
28739035-28739085,28739316-28739596,28740545-28740572,
28740653-28740749,28741216-28741272,28741353-28741415,
28741533-28741621,28741779-28741865,28742041-28742162,
28742245-28742500,28742595-28742744,28743120-28743278,
28743820-28743892,28743968-28744024,28744115-28744243,
28744469-28744560,28745220-28745252
Length = 607
Score = 33.5 bits (73), Expect = 0.20
Identities = 20/64 (31%), Positives = 28/64 (43%)
Frame = -2
Query: 482 GYGSRYNSFDSCHLPFLTLCCYLKVQLGYPDAGVVTFDHLPVQILLGFNTQLPSDSELLI 303
G ++YN S + CC+L V L + GV F P LLG+ PS + L +
Sbjct: 272 GLFNKYNEKPSV-MAIKIACCFLTVILIWEIPGVFEFLWAPFTFLLGYKDPEPSKANLPL 330
Query: 302 FSSW 291
W
Sbjct: 331 LHEW 334
>06_03_1344 -
29472139-29473292,29474478-29475386,29475504-29475618,
29476017-29476218,29477177-29477296,29477431-29477582,
29478177-29478461
Length = 978
Score = 32.7 bits (71), Expect = 0.36
Identities = 22/57 (38%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Frame = +3
Query: 636 EPPNAEEGSSL*--TDRFQTEQSPXPPAGHLHARRGAXRXDPXPADAFLGKTPDSGG 800
E NA G L T Q P PPA H A R P PA A L P GG
Sbjct: 617 EASNARGGEMLSSSTSTHCLHQPPPPPASHQFRSAAAFRRPPSPAAAPLRARPQRGG 673
>01_06_1656 +
38946922-38947542,38947640-38947739,38948045-38948189,
38948868-38948991,38949443-38949960,38950111-38950458,
38950557-38950638,38951309-38951707,38951790-38951927,
38952063-38952108,38952200-38952369
Length = 896
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/63 (26%), Positives = 33/63 (52%)
Frame = +3
Query: 399 PELDFEIAAQSQKGEVTTVEGIISRAITGLNQDQESRRSQHPDAAAKIDEFVSKLQALKD 578
P+LD+E+ + + E +E ++ D++ S PD A+++EF + L+ K
Sbjct: 632 PDLDYEVDSDDEWEEGIQIESLLD--------DKDEASSSPPDQCAEVEEFRALLRQQKV 683
Query: 579 LST 587
L+T
Sbjct: 684 LNT 686
>04_04_0624 +
26676765-26676879,26676955-26677093,26678012-26678083,
26678174-26678317,26678402-26678530,26678819-26678938,
26679015-26679076,26679937-26680170,26680259-26680485,
26680551-26680683,26680787-26680944,26681139-26681351,
26681482-26681730
Length = 664
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +1
Query: 502 NLDGVSIPMRRLRLTSLCLSFKH*RICLPLGTLQLEDIS--GNCFIENPQMPKKDPRCER 675
N DG R +LT + LS+ + +P +Q+ +S GNCF N + D +CE
Sbjct: 204 NRDGQIGLCRLTQLTDMDLSYNYLAGDVPTCFMQIRRLSLVGNCFENNDTTNRPDNQCEN 263
Query: 676 T 678
+
Sbjct: 264 S 264
>04_03_0965 -
21296608-21297165,21297332-21297682,21297781-21297965,
21298076-21298172,21298859-21299071,21299206-21299334,
21299442-21299567,21301280-21301999
Length = 792
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 587 PLGHYSLRI*AGIASSRTPKCRRRILAVNGP 679
P+ +Y+LR AG A + P CRR +AV P
Sbjct: 185 PVTYYALREAAGFARTWVPFCRRHGVAVRAP 215
>12_02_0352 - 17862577-17863528,17864076-17864827
Length = 567
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/63 (25%), Positives = 36/63 (57%)
Frame = +3
Query: 414 EIAAQSQKGEVTTVEGIISRAITGLNQDQESRRSQHPDAAAKIDEFVSKLQALKDLSTPW 593
E+ + + GE T+ ++SR ++G + + + R ++ +++ S+++A+ DLST W
Sbjct: 4 EMISSAVVGE--TLNRVVSRLVSGGSHNDDGMRG---NSMERLEMAHSRMEAVLDLSTRW 58
Query: 594 DTT 602
T
Sbjct: 59 PVT 61
>04_01_0622 -
8175226-8175312,8175674-8175763,8176370-8176457,
8177021-8177095,8177754-8177821,8177898-8177955,
8178862-8178942,8179968-8180038,8180144-8180225,
8182327-8182449,8183023-8183129,8183201-8183263,
8183877-8183936,8184100-8184151,8185566-8185598,
8185820-8185871,8185965-8186028,8186693-8186749,
8186962-8187006,8187083-8187190,8188147-8188212,
8188382-8188492,8190841-8191035,8191419-8191499,
8191591-8191630,8191764-8191816
Length = 669
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/74 (24%), Positives = 37/74 (50%)
Frame = +3
Query: 363 QVVKSDYTSIRIPELDFEIAAQSQKGEVTTVEGIISRAITGLNQDQESRRSQHPDAAAKI 542
QVV SD I +L+FE+ Q ++ + T + QD +S + + +++
Sbjct: 298 QVVGSDKLYKEIRDLNFEVVVQ-----------VLRQKATSIQQDYAEVKSTNTQSVSEL 346
Query: 543 DEFVSKLQALKDLS 584
+FV +L +L +++
Sbjct: 347 KDFVKRLHSLPEIA 360
>12_01_0830 -
7678038-7678444,7678996-7680943,7681231-7681983,
7682701-7682824,7683590-7683723
Length = 1121
Score = 28.7 bits (61), Expect = 5.8
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Frame = +3
Query: 309 ELGVRWKLRVESQQDLNRQVVKSDYTSIRIP-------ELDFE---IAAQSQKGEVTTVE 458
+LGV R ES+ LN K+DY + P LD + +A + +G T
Sbjct: 19 KLGVNIARREESRDFLNTDGDKNDYDWLLTPPETPLFRSLDDDEDKLAGPAPRGRAQTKP 78
Query: 459 GIISRAITGLNQDQESRRSQHPD 527
+ISR+ T N + SR S P+
Sbjct: 79 ILISRSSTMENAQRSSRSSASPN 101
>01_05_0788 +
25223373-25223405,25224285-25224373,25224496-25224624,
25224710-25224766,25224844-25224916,25225509-25225667,
25226755-25226904,25227013-25227268,25227358-25227479,
25227531-25227599,25227653-25227739,25227842-25227930,
25228168-25228224,25229162-25229258,25229348-25229506
Length = 541
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/64 (28%), Positives = 27/64 (42%)
Frame = -2
Query: 482 GYGSRYNSFDSCHLPFLTLCCYLKVQLGYPDAGVVTFDHLPVQILLGFNTQLPSDSELLI 303
G ++YN S + + C+L V L + GV P LLG+ PS + L +
Sbjct: 271 GLFNKYNEIPSV-MAMKIVSCFLAVILIWEIPGVFELLWSPFTFLLGYKDPEPSKANLPL 329
Query: 302 FSSW 291
W
Sbjct: 330 LHEW 333
>10_07_0165 +
13740611-13740706,13741159-13741215,13741523-13741681,
13742315-13742398,13742496-13742567,13742810-13742881,
13743085-13743125,13743296-13743362,13744033-13744224,
13744314-13744403,13744742-13744849,13745089-13745154
Length = 367
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 53 YSFFDFRLQKCVPANLKPMFRDLTAEDPDPEVTEIESFCIN 175
Y F+D L+K AN+ +F DL P + E E FC++
Sbjct: 185 YGFYDECLRKYGSANVWKIFTDLFDYFPLTALVESEIFCLH 225
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,515,538
Number of Sequences: 37544
Number of extensions: 483624
Number of successful extensions: 1230
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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