Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_D14
(841 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0070 - 542603-542686,542803-543441 33 0.37
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 29 3.5
04_01_0159 - 1824343-1824405,1824485-1824595,1825282-1825448,182... 29 3.5
07_03_1747 + 29188568-29188715,29188793-29189541 29 6.1
06_01_0081 + 646100-646346,646432-646848,647067-647170,648152-64... 29 6.1
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 28 8.1
08_02_0813 + 21459776-21461128 28 8.1
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 28 8.1
04_03_1027 - 21820843-21820878,21820974-21821117,21821220-218213... 28 8.1
02_05_0822 + 32025992-32026696,32027237-32027314,32027547-320277... 28 8.1
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 8.1
>01_01_0070 - 542603-542686,542803-543441
Length = 240
Score = 32.7 bits (71), Expect = 0.37
Identities = 21/71 (29%), Positives = 22/71 (30%)
Frame = +3
Query: 597 TPXPXAXVXXPXXHXXQXVLPRXTPPRHXAXAGPXQGFAXXXXXLMXXXRXAXPPPXTXP 776
TP P A P TPP A A P + A PPP T P
Sbjct: 39 TPVPTAPAKSPPAPATPAPTATPTPPVAPAKAPPVAPAVAPVTPPPPTPKKAPPPPVTPP 98
Query: 777 PXXXXXGXPPP 809
P PPP
Sbjct: 99 PVTPPPVTPPP 109
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 29.5 bits (63), Expect = 3.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 194 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 105
+GG L ++Q G Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129
>04_01_0159 -
1824343-1824405,1824485-1824595,1825282-1825448,
1825853-1826029,1826404-1826656
Length = 256
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -2
Query: 366 TGAESVVPGGGCSRV*QYHVRPPQAFRGHQPSAAAPFPLRSNSVVCRSNS 217
T + S GGCS + PP AFRG+ + P + V CR+ S
Sbjct: 59 TASASASASGGCSPAPPWAPSPP-AFRGNVKARYQPVMFNGSIVYCRTPS 107
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 28.7 bits (61), Expect = 6.1
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +2
Query: 335 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCXLARSK 475
PPP TT++ V L TA + S + QF+C+ TTC + S+
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESE 256
>06_01_0081 +
646100-646346,646432-646848,647067-647170,648152-648352,
649088-649798,649944-650674,650942-651017,651096-651182,
651429-651517,651917-651973,652402-652510,652590-652649,
652835-652919,653178-653242,653694-653753,653869-653913,
654697-654800,654877-655099
Length = 1156
Score = 28.7 bits (61), Expect = 6.1
Identities = 18/61 (29%), Positives = 24/61 (39%)
Frame = -2
Query: 591 TRHGTDXSPSHXPWGXTXLYIXLSIAKSXSSVLXILEPNLERASXHVVGPXV*LHRNWSA 412
T+HG S SH P L I SI S + + ++ N H+ G H S
Sbjct: 616 TKHGCLLSSSHEPHPKKGLDISSSIHSSFNPIATSVDDNFPEVKAHINGDGECAHDAISG 675
Query: 411 N 409
N
Sbjct: 676 N 676
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 179 VRVHRADTGRSSNELDRQTTELERRG 256
V+ H + R S EL+RQ ELER+G
Sbjct: 89 VQRHGEELERQSRELERQREELERQG 114
>08_02_0813 + 21459776-21461128
Length = 450
Score = 28.3 bits (60), Expect = 8.1
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +1
Query: 250 QGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPISM 429
+G++ C WL + R P LL+ TT R V+ W K+ IS P+S+
Sbjct: 237 RGDYRCPAWLSTDARRLIPR--LLDPNPTT------RISVAQLVETPWFKKTSISRPVSI 288
Query: 430 QL 435
+L
Sbjct: 289 EL 290
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +3
Query: 66 SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMN 221
+L +D L+ YD+ PPDS+ V HA + +R+L + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209
>04_03_1027 -
21820843-21820878,21820974-21821117,21821220-21821358,
21821522-21821652,21823615-21823670,21823964-21824258
Length = 266
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -1
Query: 355 ERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPIPPAFQLSRLSIQFI 215
E + R W + RLA+ ++ V R K P+PP L+ L++ +
Sbjct: 47 EAAKRGWSEIRLAIEELSAVDVERRGGKPPPPLPPPPTLTFLALSHL 93
>02_05_0822 +
32025992-32026696,32027237-32027314,32027547-32027713,
32027811-32027885,32028624-32028742,32028908-32029204,
32029275-32029362,32029467-32029572,32029727-32029837,
32030520-32030683,32031237-32031357,32031958-32032182,
32032267-32032457,32032658-32032825,32032911-32033016,
32033301-32033438,32033533-32033697,32033777-32033980,
32034341-32034535,32034603-32034674,32034797-32034949
Length = 1215
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -2
Query: 303 PPQAFR-GHQPSAAAPFPLRSNSVVCRSNS 217
PP+ FR GH P AAAP PLR++ S S
Sbjct: 32 PPEKFRSGHLPRAAAP-PLRTDDGSVASGS 60
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 364 GRGERSPRRWLQPRLAVPRQASTSVPRTP 278
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,575,494
Number of Sequences: 37544
Number of extensions: 505787
Number of successful extensions: 1520
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1501
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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