Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_D10
         (819 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0995 + 21521877-21521977,21522152-21522217,21523630-215236...    30   1.9  
12_01_0748 - 6728221-6728305,6728788-6728842,6729202-6729289,672...    29   4.4  
01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242           29   5.9  

>04_03_0995 +
           21521877-21521977,21522152-21522217,21523630-21523696,
           21523959-21524041,21524318-21524359,21524614-21524733,
           21524806-21524869,21525028-21525113,21525217-21525299,
           21525994-21526070,21526549-21526567,21526568-21526661,
           21527042-21527087
          Length = 315

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = -2

Query: 773 TXGFAEMHRVANFPYX-LPM-FTFYNLXXSLKCFSNRFHYFFLSLNPSLFGLRCNLQFGN 600
           T  F E+  +   PY   PM F   +L  +  CF  ++++F +SLN  L     N  F  
Sbjct: 176 TIFFIEVSVIGYIPYFGKPMNFLLLSLMYAYYCFEYKWNFFAVSLNERLDFFESNWAF-- 233

Query: 599 CWLGFGS 579
            + GFGS
Sbjct: 234 -FAGFGS 239


>12_01_0748 -
           6728221-6728305,6728788-6728842,6729202-6729289,
           6729681-6729818,6729978-6730142,6730235-6730354,
           6730555-6730631,6730738-6731113,6731523-6732617
          Length = 732

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 798 YLGCLGGSNXWVCGNAQSCEFSVLSSHVHLLQPS 697
           YLGC+GG   +   N  +C+    ++ VHLL+P+
Sbjct: 695 YLGCIGG--LYKRTNFANCKTETETNQVHLLEPA 726


>01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242
          Length = 417

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 161 VSQNTGTCPESSCACPETSC 220
           ++++  TCP + C CPE  C
Sbjct: 116 ITEHEKTCPHAPCFCPEPGC 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,840,424
Number of Sequences: 37544
Number of extensions: 116060
Number of successful extensions: 309
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)