Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_D09
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    41   2e-04
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    40   4e-04
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.57 
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    29   1.0  
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    27   2.3  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 21/38 (55%), Positives = 25/38 (65%)
 Frame = +1

Query: 100 LSVARPLXSVYSXKX*TGXGATXPLPFVFKGPIRPDLV 213
           ++ ARP  S+YS K  +    T  LPFVFK PIRPDLV
Sbjct: 1   MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLV 37


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 20/38 (52%), Positives = 25/38 (65%)
 Frame = +1

Query: 100 LSVARPLXSVYSXKX*TGXGATXPLPFVFKGPIRPDLV 213
           ++ ARP  S+Y+ K  +    T  LPFVFK PIRPDLV
Sbjct: 1   MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLV 37


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 19/57 (33%), Positives = 19/57 (33%)
 Frame = +2

Query: 572 PPPPPVXXXPXXXXXKKXKXGGXXXXXPPPXGXXXXXGGXXPPPPPXXGGGXXKXPP 742
           PPPPP    P                 PPP       GG  PPPPP    G    PP
Sbjct: 733 PPPPPAVIVPTPAPAP--------IPVPPPA---PIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/44 (31%), Positives = 14/44 (31%)
 Frame = -2

Query: 765 PPPXKKKXGGXXXXPPPXXGGGGGXXPPXXXXXPXGGGXXXKXP 634
           PPP     G     PPP   G G   PP        GG     P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795



 Score = 27.9 bits (59), Expect = 1.8
 Identities = 19/66 (28%), Positives = 20/66 (30%), Gaps = 7/66 (10%)
 Frame = +2

Query: 566 KXPPPPP---VXXXPXXXXXKKXKXGGXXXXXPPPXGXXXXXGGXXPPPPP----XXGGG 724
           K PPPPP   +   P                 PPP       G   PPPPP       GG
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789

Query: 725 XXKXPP 742
                P
Sbjct: 790 SRYYAP 795


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 17/58 (29%), Positives = 18/58 (31%)
 Frame = +2

Query: 575 PPPPVXXXPXXXXXKKXKXGGXXXXXPPPXGXXXXXGGXXPPPPPXXGGGXXKXPPXF 748
           PPPP+   P                 PPP       G   PPPP     G    PP F
Sbjct: 286 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPP-MHHEPGEHMPPPPMHHEPGEHMPPPPF 342



 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/56 (28%), Positives = 17/56 (30%)
 Frame = +2

Query: 575 PPPPVXXXPXXXXXKKXKXGGXXXXXPPPXGXXXXXGGXXPPPPPXXGGGXXKXPP 742
           PPPP+   P                 PPP       G   PPPP     G    PP
Sbjct: 208 PPPPMHHKPGEHMPPPPMHHEPGEHMPPPP-MHHEPGEHMPPPPMHHEPGEHMPPP 262



 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/56 (28%), Positives = 17/56 (30%)
 Frame = +2

Query: 575 PPPPVXXXPXXXXXKKXKXGGXXXXXPPPXGXXXXXGGXXPPPPPXXGGGXXKXPP 742
           PPPP+   P                 PPP       G   PPPP     G    PP
Sbjct: 221 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPP-MHHEPGEHMPPPPMHHEPGEHMPPP 275



 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/56 (28%), Positives = 17/56 (30%)
 Frame = +2

Query: 575 PPPPVXXXPXXXXXKKXKXGGXXXXXPPPXGXXXXXGGXXPPPPPXXGGGXXKXPP 742
           PPPP+   P                 PPP       G   PPPP     G    PP
Sbjct: 234 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPP-MHHEPGEHMPPPPMHHEPGEHMPPP 288



 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/56 (28%), Positives = 17/56 (30%)
 Frame = +2

Query: 575 PPPPVXXXPXXXXXKKXKXGGXXXXXPPPXGXXXXXGGXXPPPPPXXGGGXXKXPP 742
           PPPP+   P                 PPP       G   PPPP     G    PP
Sbjct: 247 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPP-MHHEPGEHMPPPPMHHEPGEHMPPP 301


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 142 FFXNTPTXKVGLPIDSFRYFSEAIPLKY-TLIAVI 41
           F   TP     LP+ SF Y +  +PL Y TL+AV+
Sbjct: 179 FTPRTPPKLGYLPVPSFIYSTGELPLSYPTLLAVL 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,116,370
Number of Sequences: 5004
Number of extensions: 31773
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)