Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_D08
(919 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 51 2e-08
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 47 3e-07
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 46 6e-07
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 46 6e-07
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 45 1e-06
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 44 3e-06
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 44 3e-06
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 42 6e-06
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 42 6e-06
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 42 8e-06
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 42 8e-06
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 42 8e-06
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 42 8e-06
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 42 8e-06
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 42 8e-06
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 39 6e-05
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 39 6e-05
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 39 7e-05
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 38 1e-04
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 36 5e-04
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 30 0.026
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 30 0.034
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 29 0.078
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 50.8 bits (116), Expect = 2e-08
Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 8/105 (7%)
Frame = +1
Query: 103 IASAAECENATSLSLMIDSLLATYDRESPPDSK----IVVNLTLHLRHA---NIRESEST 261
I SA C + D LL+ Y+R P S +VV L L L N+++ T
Sbjct: 9 ILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILT 68
Query: 262 VRILADLQMNWIDKRLSWNAXEWGCITWL-VSSERLWRPDVVLLN 393
+ L+ W D + W+ E+G +T L V SE +W PD+VL N
Sbjct: 69 TNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVLYN 111
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 46.8 bits (106), Expect = 3e-07
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Frame = +1
Query: 121 CENATSLSLMIDS---LLATYDRESPPDSKIV--VNLTLHLRHANIRESESTVRILADLQ 285
C++ TS S + L YDR+ P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 286 MNWIDKRLSWNAXEWGCITWL-VSSERLWRPDVVL 387
+ W L+W + E+ I + V S +W PD+V+
Sbjct: 88 LMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIVM 122
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 45.6 bits (103), Expect = 6e-07
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Frame = +1
Query: 121 CENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLR-------HANIRESESTVRILAD 279
C + D LL+ Y++ P + LT+ ++ N++ T +
Sbjct: 19 CSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLW-- 76
Query: 280 LQMNWIDKRLSWNAXEWGCITWL-VSSERLWRPDVVLLN 393
++ +W D +L W+ E+G + L V S+ +WRPD+VL N
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYN 115
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 45.6 bits (103), Expect = 6e-07
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 8/108 (7%)
Frame = +1
Query: 94 TCAIASAAECENATSLSLMIDSLLATYDRESPP----DSKIVVNLTLHLRH---ANIRES 252
+C +A + + D LL+ Y+R P ++ V + L L N++
Sbjct: 6 SCLVAPFPGASANSEAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQ 65
Query: 253 ESTVRILADLQMNWIDKRLSWNAXEWGCITWL-VSSERLWRPDVVLLN 393
T + ++ W D +L WN ++G + L V SE +W PD+VL N
Sbjct: 66 IMTTNVW--VEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYN 111
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 44.8 bits (101), Expect = 1e-06
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Frame = +1
Query: 148 MIDSLLATYDRESPPDSKIVVNLT--LHLRHANIRESESTVRILAD---LQMNWIDKRLS 312
+ D LL+ Y+R P LT L L+ + + E +++ ++ W D +L
Sbjct: 37 LYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVWVEQRWNDYKLK 96
Query: 313 WNAXEWGCITWL-VSSERLWRPDVVLLN 393
WN E+G + L V SE +W PD+VL N
Sbjct: 97 WNPEEYGGVEMLYVPSENIWLPDIVLYN 124
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 43.6 bits (98), Expect = 3e-06
Identities = 24/88 (27%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
Frame = +1
Query: 148 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLS 312
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 313 WNAXEWGCITWL-VSSERLWRPDVVLLN 393
W E+G + L V S+ +WRPD+VL N
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYN 119
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 43.6 bits (98), Expect = 3e-06
Identities = 24/88 (27%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
Frame = +1
Query: 148 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLS 312
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 313 WNAXEWGCITWL-VSSERLWRPDVVLLN 393
W E+G + L V S+ +WRPD+VL N
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYN 119
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 42.3 bits (95), Expect = 6e-06
Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 6/89 (6%)
Frame = +1
Query: 148 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 312
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 313 WNAXEWGCITWL-VSSERLWRPDVVLLNA 396
WN E+G + L ++ +LW+PD+++ N+
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDILMYNS 146
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 42.3 bits (95), Expect = 6e-06
Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 6/89 (6%)
Frame = +1
Query: 148 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 312
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 313 WNAXEWGCITWL-VSSERLWRPDVVLLNA 396
WN E+G + L ++ +LW+PD+++ N+
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDILMYNS 146
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 41.9 bits (94), Expect = 8e-06
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +1
Query: 238 NIRESESTVRILADLQMNWIDKRLSWNAXEWGCITWL-VSSERLWRPDVVLLNA 396
++ E + A L++ W+D L WN E+G + L ++ +LW+PD+++ N+
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNS 78
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 41.9 bits (94), Expect = 8e-06
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +1
Query: 238 NIRESESTVRILADLQMNWIDKRLSWNAXEWGCITWL-VSSERLWRPDVVLLNA 396
++ E + A L++ W+D L WN E+G + L ++ +LW+PD+++ N+
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNS 78
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 41.9 bits (94), Expect = 8e-06
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +1
Query: 238 NIRESESTVRILADLQMNWIDKRLSWNAXEWGCITWL-VSSERLWRPDVVLLNA 396
++ E + A L++ W+D L WN E+G + L ++ +LW+PD+++ N+
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNS 78
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 41.9 bits (94), Expect = 8e-06
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +1
Query: 238 NIRESESTVRILADLQMNWIDKRLSWNAXEWGCITWL-VSSERLWRPDVVLLNA 396
++ E + A L++ W+D L WN E+G + L ++ +LW+PD+++ N+
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNS 78
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 41.9 bits (94), Expect = 8e-06
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +1
Query: 238 NIRESESTVRILADLQMNWIDKRLSWNAXEWGCITWL-VSSERLWRPDVVLLNA 396
++ E + A L++ W+D L WN E+G + L ++ +LW+PD+++ N+
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNS 78
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 41.9 bits (94), Expect = 8e-06
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +1
Query: 238 NIRESESTVRILADLQMNWIDKRLSWNAXEWGCITWL-VSSERLWRPDVVLLNA 396
++ E + A L++ W+D L WN E+G + L ++ +LW+PD+++ N+
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNS 78
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 39.1 bits (87), Expect = 6e-05
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Frame = +1
Query: 127 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLHLRHAN-IRESESTVRILADLQMNW 294
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 295 IDKRLSWNAXEWGCITWLVSSERLWRPDVVLLN 393
+D+RL++ + + R+W+PD N
Sbjct: 62 VDRRLAFQGGKETLALSISMLARIWKPDTYFYN 94
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 39.1 bits (87), Expect = 6e-05
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Frame = +1
Query: 199 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAXEWGCITWL-VSSERLWR 372
K+ VN L ++ N+ E ++ L+ W D +L W+ ++G I L + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 373 PDVVLLN 393
PD+VL N
Sbjct: 111 PDIVLFN 117
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 38.7 bits (86), Expect = 7e-05
Identities = 26/105 (24%), Positives = 53/105 (50%), Gaps = 6/105 (5%)
Frame = +1
Query: 100 AIASAAECENATSLSLMIDSLLATYD-RESPPDSK---IVVNLTLHLRHA-NIRESESTV 264
A+A++ + +++ LL TY+ E P ++ +V++ L L ++ E +
Sbjct: 11 ALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDVDEKNQLL 70
Query: 265 RILADLQMNWIDKRLSWNAXEWGCITWL-VSSERLWRPDVVLLNA 396
L++ W D + WN ++G + L + RLW+PDV++ N+
Sbjct: 71 ITNLWLKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYNS 115
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 37.9 bits (84), Expect = 1e-04
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +1
Query: 202 IVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAXEWGCITWL-VSSERLWRPD 378
+V L+LH ++ E + + W D L WNA E+ I + V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 379 VVLLN 393
+L N
Sbjct: 92 TILYN 96
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 35.9 bits (79), Expect = 5e-04
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Frame = +1
Query: 124 ENATSLSLMIDSLLATYDRESPPDS--KIVVNLTLHL--RHANIRESESTVRILADLQMN 291
++ T+L + L YD P S +I N+T+ L + + S + + + + +
Sbjct: 39 DHPTTLLKLKRYLFCEYDPNVRPISSHQIANNVTMQLLPKLMEFDDWTSVMELHSWMTLM 98
Query: 292 WIDKRLSWNAXEWGCITWL-VSSERLWRPDVVLLNA 396
W D LSW ++ I ++ V S+ +W PD+ + N+
Sbjct: 99 WTDSHLSWKPSDFDGINYIYVKSDDIWVPDISVYNS 134
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 30.3 bits (65), Expect = 0.026
Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Frame = +1
Query: 136 SLSLMIDSLLATYDRESPPD----SKIVVNLTLHLRHAN-IRESESTVRILADLQMNWID 300
++++++++LL Y+ P + VV + +R + E + + + +W D
Sbjct: 36 NITMVLENLLMNYENNQLPTHGKGTPTVVKTNILIRSMGPVSELDMDYSMDCYFRQSWRD 95
Query: 301 KRLSWNAXEWGCITWLVSSERLWRPDVVLLN 393
RLS+ + ER+WRPD N
Sbjct: 96 SRLSFLGPIKSLSLSIKMLERIWRPDTYFYN 126
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 29.9 bits (64), Expect = 0.034
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Frame = +1
Query: 127 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 294
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFW 67
Query: 295 IDKRLSWNAXEWGCITWLVSSE---RLWRPDVVLLN 393
D RL++ G T V SE +W PD +N
Sbjct: 68 TDPRLAFK-KRTGVETLSVGSEFIKNIWVPDTFFVN 102
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 28.7 bits (61), Expect = 0.078
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Frame = +1
Query: 127 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 294
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDFTLDFYFRQFW 67
Query: 295 IDKRLSWNAXEWGCITWLVSSE---RLWRPDVVLLN 393
D RL++ G T V SE +W PD +N
Sbjct: 68 TDPRLAFK-KRTGVETLSVGSEFIKNIWVPDTFFVN 102
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,993
Number of Sequences: 438
Number of extensions: 3176
Number of successful extensions: 46
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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