Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_D07
         (867 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    33   0.053
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.16 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.37 
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    30   0.49 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   2.0  
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    27   3.5  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    26   6.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   8.0  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 33.1 bits (72), Expect = 0.053
 Identities = 28/98 (28%), Positives = 31/98 (31%), Gaps = 3/98 (3%)
 Frame = -2

Query: 863  APXEKSPXPAAXRXXPGXXAPERAAKXPGGPXXPXGAXPXXTPPPXPPXXXXRXRXAXRP 684
            AP    P PA     P   AP  A   P     P    P    PP P     +   A  P
Sbjct: 1059 APSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVP-----KPSVAVPP 1113

Query: 683  V---LGXXPXXXPXXSRXPPAXXSXTPPIXXXPXXXAP 579
            V    G  P   P  +  P    S  PP+   P   AP
Sbjct: 1114 VPAPSGAPPVPKPSVAAPPVPVPSGAPPV-PKPSVAAP 1150



 Score = 28.7 bits (61), Expect = 1.1
 Identities = 25/96 (26%), Positives = 29/96 (30%), Gaps = 1/96 (1%)
 Frame = -2

Query: 863  APXEKSPXPAAXRXXPGXXAPERAAKXPGGPXXPXGAXPXXTPPPXPPXXXXRXRXAXRP 684
            AP    P PA     P    P+ +   P  P       P   P   PP           P
Sbjct: 1078 APSGAPPVPAPSGIPP---VPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVP 1134

Query: 683  V-LGXXPXXXPXXSRXPPAXXSXTPPIXXXPXXXAP 579
            V  G  P   P  +  P    S  PP+   P   AP
Sbjct: 1135 VPSGAPPVPKPSVAAPPVPAPSGAPPV-PKPSVAAP 1169


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 22/73 (30%), Positives = 24/73 (32%), Gaps = 1/73 (1%)
 Frame = +3

Query: 558 GXXYLPXGXGXXGXXXYGGGXGPXXGGSXTXXGXLXXGXPKXRAXGXPXPXXXPGGXRGG 737
           G  +   G    G   +GGG G    G     G    G       G       PGG  GG
Sbjct: 177 GNLFHHRGHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGG 236

Query: 738 -GXXGGGSXGXXG 773
            G  GGG  G  G
Sbjct: 237 PGGFGGGPGGFGG 249


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 19/66 (28%), Positives = 20/66 (30%)
 Frame = -3

Query: 775  APXXPXEPPPXXPPPRXPPGXXXGXGXPYARXLGXPXXXXPXXVXDPPXXGPXPPP*XXX 596
            AP  P   PP  P    PP        P    +  P    P     PP   P P P    
Sbjct: 1682 APAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPA-GPPSAPPPPLPASSA 1740

Query: 595  PXXPXP 578
            P  P P
Sbjct: 1741 PSVPNP 1746


>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +1

Query: 292 VRVHRADTGRSSNELDRQTTELERR 366
           +R H+   GR+  ELDR+ T+L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 20/79 (25%), Positives = 24/79 (30%)
 Frame = -2

Query: 845 PXPAAXRXXPGXXAPERAAKXPGGPXXPXGAXPXXTPPPXPPXXXXRXRXAXRPVLGXXP 666
           P P   R  P    P R+A   G    P  +    + PP PP           P LG   
Sbjct: 352 PLPPQGRSAP-PPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNAS 410

Query: 665 XXXPXXSRXPPAXXSXTPP 609
                    PP+     PP
Sbjct: 411 RTSTPPVPTPPSLPPSAPP 429



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/58 (27%), Positives = 18/58 (31%), Gaps = 3/58 (5%)
 Frame = -3

Query: 772 PXXPXEPPPXXPP---PRXPPGXXXGXGXPYARXLGXPXXXXPXXVXDPPXXGPXPPP 608
           P  P   PP  PP   P  P G       P +  +  P           P   P PPP
Sbjct: 421 PSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = -2

Query: 782 PGGPXXPXGAXPXXTPPPXPPXXXXRXRXAXRP 684
           P  P  P G  P   PPP PP    + R    P
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 216 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNK 118
           Y    ES + D+ +  SH+ A +I Q  R+G +
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 361 VPTQSFVDPIHLKICQYPHGGL 296
           +P Q+F    H+++C YP GG+
Sbjct: 153 IPQQNFT---HVRLCMYPDGGI 171


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -3

Query: 772 PXXPXEPPPXXPPPRXPPGXXXGXGXP 692
           P  P  P    PPP  PP    G G P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPP 776


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,434,154
Number of Sequences: 5004
Number of extensions: 41880
Number of successful extensions: 170
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)