Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_D06
(819 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 182 4e-47
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 182 4e-47
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra... 26 7.4
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 9.8
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 25 9.8
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 25 9.8
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 182 bits (444), Expect = 4e-47
Identities = 103/230 (44%), Positives = 130/230 (56%), Gaps = 3/230 (1%)
Frame = +3
Query: 102 LSVARPLXVGVFREE*DGAGXQPSPSRFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 281
++ ARP V ++ ++ + FVFKAPIRPDLV VH +++KN RQPY VS++A
Sbjct: 1 MAAARPT-VSIYNKD-GSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKA 58
Query: 282 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXX 461
GHQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 59 GHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQN 118
Query: 462 XXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLGCSRQSPRDQQDQTGCHLPEAPQGMV 641
ARGH IE+IPE+PL Q+ + L + +
Sbjct: 119 EKRYAIASAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKA-- 176
Query: 642 *YP*GVQVSAS---SCW*G*NAQPSSYPA*GALIIFNKDQGXNRAFRKIP 782
Y ++V+ S G G L++FN+D G +AFR IP
Sbjct: 177 -YRDVIKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDTGIVKAFRNIP 225
Score = 86.6 bits (205), Expect = 4e-18
Identities = 42/93 (45%), Positives = 58/93 (62%)
Frame = +1
Query: 538 LKRFPSFPWVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQ 717
++ P P VV D VQ KTK+AV L+ +KA+ D++KV S++LRAGKGK+RNRR +Q
Sbjct: 144 IEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQ 203
Query: 718 RKGPS*SSTRIRV*IAPSGKSPGVEXLNVNKLN 816
R+GP + PGVE +NV +LN
Sbjct: 204 RRGPLVVFNEDTGIVKAFRNIPGVEIVNVRRLN 236
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 182 bits (444), Expect = 4e-47
Identities = 100/203 (49%), Positives = 119/203 (58%), Gaps = 3/203 (1%)
Frame = +3
Query: 183 FVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTH 362
FVFKAPIRPDLV VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGGTH
Sbjct: 26 FVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTH 85
Query: 363 RSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIE 542
RSGQ AFGNMCR GRMFAPTK WR+WH ARGH IE
Sbjct: 86 RSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLARGHRIE 145
Query: 543 KIPELPLGCSRQSPRDQQDQTGCHLPEAPQGMV*YP*GVQVSAS---SCW*G*NAQPSSY 713
+IPE+PL Q+ + L + + Y V+V+ S G
Sbjct: 146 EIPEVPLVVDDAVQSFQKTKEAVALLKEIKA---YRDVVKVANSRKLRAGKGKLRNRRHV 202
Query: 714 PA*GALIIFNKDQGXNRAFRKIP 782
G L++FN+D G +AFR IP
Sbjct: 203 QRRGPLVVFNEDAGIVKAFRNIP 225
Score = 86.2 bits (204), Expect = 5e-18
Identities = 42/93 (45%), Positives = 58/93 (62%)
Frame = +1
Query: 538 LKRFPSFPWVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQ 717
++ P P VV D VQ KTK+AV L+ +KA+ D++KV S++LRAGKGK+RNRR +Q
Sbjct: 144 IEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQ 203
Query: 718 RKGPS*SSTRIRV*IAPSGKSPGVEXLNVNKLN 816
R+GP + PGVE +NV +LN
Sbjct: 204 RRGPLVVFNEDAGIVKAFRNIPGVEIVNVRRLN 236
>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
3-phosphatidyltransferase Pis1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Frame = -1
Query: 120 KVG-LPIDSFRYFSEAIPLKY-TLIAVI 43
K+G LP+ SF Y + +PL Y TL+AV+
Sbjct: 186 KLGYLPVPSFIYSTGELPLSYPTLLAVL 213
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.4 bits (53), Expect = 9.8
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +1
Query: 538 LKRFPSFPWVVAD 576
L ++P FPWV+AD
Sbjct: 1947 LTQYPVFPWVIAD 1959
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 25.4 bits (53), Expect = 9.8
Identities = 9/21 (42%), Positives = 18/21 (85%)
Frame = -2
Query: 575 SATTQGKLGNLFNNVSSSLNE 513
SAT+ +L ++F+N+SSS+++
Sbjct: 670 SATSNSQLSSIFSNLSSSISD 690
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 25.4 bits (53), Expect = 9.8
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = +3
Query: 531 HIIEKIPELPLGCSRQSPRDQQDQTGCH 614
H++EK+ E+ + C R ++ CH
Sbjct: 264 HLLEKLTEVNVMCDRHMDAISSEELACH 291
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,079,884
Number of Sequences: 5004
Number of extensions: 57393
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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