Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_D04
         (935 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    36   0.008
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    33   0.058
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.076
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.23 
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    30   0.41 
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    25   1.7  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.9  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   5.0  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 35.9 bits (79), Expect = 0.008
 Identities = 15/43 (34%), Positives = 17/43 (39%)
 Frame = +2

Query: 578 PPPPPPXKXXKTPPPXRRGXXAXXXXPPPPGXXXXXXXXXPXP 706
           PPPPPP +  +  PP   G       PPPP          P P
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLP 354



 Score = 33.5 bits (73), Expect = 0.044
 Identities = 16/44 (36%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
 Frame = +3

Query: 576 PPPPPPPXK--XXKPPPXRXXGXXRXXXPXXPPXRXXXGXXPXP 701
           PPPPPPP +    KPP            P  PP     G  P P
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLP 354



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
 Frame = +3

Query: 546 PXXPPGXGXXPPPPP--PPXKXXKPPP 620
           P  P G    PPPPP   P    +PPP
Sbjct: 352 PLPPQGRSAPPPPPPRSAPSTGRQPPP 378



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 24/101 (23%), Positives = 27/101 (26%)
 Frame = +2

Query: 578 PPPPPPXKXXKTPPPXRRGXXAXXXXPPPPGXXXXXXXXXPXPTXXXGXXGRXXXGXXPX 757
           PP PPP    ++ P       A     PP           P P+           G  P 
Sbjct: 388 PPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAP-PSLPPSAPPSLPMGA-PA 445

Query: 758 GXXXXPXXGCXPXAXTTXXXPXPXPPRXXXXPRAPXPXPXA 880
                P     P          P PP     P AP P P A
Sbjct: 446 APPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAA 486



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 26/100 (26%), Positives = 28/100 (28%), Gaps = 1/100 (1%)
 Frame = +2

Query: 578 PPPPPPXKXXK-TPPPXRRGXXAXXXXPPPPGXXXXXXXXXPXPTXXXGXXGRXXXGXXP 754
           PPPPPP      + P   +G  A    PPPP          P P                
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSA---PPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPA 394

Query: 755 XGXXXXPXXGCXPXAXTTXXXPXPXPPRXXXXPRAPXPXP 874
                 P       A  T   P P PP     P AP   P
Sbjct: 395 IPGRSAPALPPLGNASRTSTPPVPTPP--SLPPSAPPSLP 432



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 26/107 (24%), Positives = 27/107 (25%)
 Frame = +2

Query: 554 PPGXRGXXPPPPPPXKXXKTPPPXRRGXXAXXXXPPPPGXXXXXXXXXPXPTXXXGXXGR 733
           PP        P PP      PPP  R   +    PPP             P       GR
Sbjct: 342 PPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP---LSSSRAVSNPPAPPPAIPGR 398

Query: 734 XXXGXXPXGXXXXPXXGCXPXAXTTXXXPXPXPPRXXXXPRAPXPXP 874
                 P G          P   T    P   PP     P AP   P
Sbjct: 399 SAPALPPLGNASRT---STPPVPTPPSLPPSAPP--SLPPSAPPSLP 440


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 33.1 bits (72), Expect = 0.058
 Identities = 15/25 (60%), Positives = 15/25 (60%)
 Frame = -2

Query: 619 GGGFXXFXGGGGGGGXXPXPGGXXG 545
           GGGF  F  GGG GG  P PGG  G
Sbjct: 187 GGGFGGF--GGGSGGPPPGPGGFGG 209



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = -2

Query: 619 GGGFXXFXGGGGGGGXXPXPGGXXG 545
           GGG   F  GGG GG    PGG  G
Sbjct: 248 GGGLGGF--GGGPGGFGGGPGGHGG 270


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.7 bits (71), Expect = 0.076
 Identities = 16/37 (43%), Positives = 16/37 (43%)
 Frame = +3

Query: 546 PXXPPGXGXXPPPPPPPXKXXKPPPXRXXGXXRXXXP 656
           P  PPG     PPPPPP     PPP    G  R   P
Sbjct: 764 PPPPPGVAGAGPPPPPP-----PPPAVSAGGSRYYAP 795



 Score = 31.1 bits (67), Expect = 0.23
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = +2

Query: 554 PPGXRGXXPPPPPPXKXXKTPPPXRRGXXAXXXXPPP 664
           PPG  G  PPPPPP      PPP      +    P P
Sbjct: 767 PPGVAGAGPPPPPP------PPPAVSAGGSRYYAPAP 797



 Score = 30.3 bits (65), Expect = 0.41
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +3

Query: 558 PGXGXXPPPPPPPXKXXKPPPXRXXGXXRXXXPXXPP 668
           P     P PPP P     PPP    G      P  PP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 30.3 bits (65), Expect = 0.41
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +3

Query: 546 PXXPPGXGXXPPPPPPPXKXXKPPP 620
           P   P  G  PPPPPPP      PP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPP 776



 Score = 29.9 bits (64), Expect = 0.54
 Identities = 19/66 (28%), Positives = 19/66 (28%), Gaps = 7/66 (10%)
 Frame = +2

Query: 578 PPPPPPXKXXKTP-------PPXRRGXXAXXXXPPPPGXXXXXXXXXPXPTXXXGXXGRX 736
           PPPPPP     TP       PP           PPPPG         P P       G  
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSR 791

Query: 737 XXGXXP 754
                P
Sbjct: 792 YYAPAP 797



 Score = 29.9 bits (64), Expect = 0.54
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +3

Query: 546 PXXPPGXGXXPPPPPPPXKXXKPPP 620
           P  P   G  PPPPPP      PPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPP 777



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 15/46 (32%), Positives = 15/46 (32%), Gaps = 4/46 (8%)
 Frame = +3

Query: 576 PPPPPP----PXKXXKPPPXRXXGXXRXXXPXXPPXRXXXGXXPXP 701
           PPPPPP    P     P P           P  PP     G  P P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777



 Score = 25.8 bits (54), Expect = 8.8
 Identities = 17/52 (32%), Positives = 17/52 (32%)
 Frame = +3

Query: 546 PXXPPGXGXXPPPPPPPXKXXKPPPXRXXGXXRXXXPXXPPXRXXXGXXPXP 701
           P  PP     P P P P     PPP    G      P  PP     G  P P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPV--PPPAPIMGG--PPPPPPPPGVAGAGPPPPP 779


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
 Frame = +3

Query: 555 PPGXGXXPPPPP---PPXKXXKPPP 620
           PPG    PPPPP   PP +   PPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
 Frame = +2

Query: 545 ARXPPGXRGXXPPPP---PPXKXXKTPPP 622
           A  PPG     PPPP   PP +    PPP
Sbjct: 2   ASLPPGNPPPPPPPPGFEPPSQPPPPPPP 30


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +2

Query: 578  PPPPPPXKXXKTPPPXRRGXXAXXXXPPPPG 670
            PPPPPP    K  PP      A     PP G
Sbjct: 1882 PPPPPPMALPKAGPPSAAPTSALPPAGPPAG 1912


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 25.0 bits (52), Expect(2) = 1.7
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 576  PPPPPPPXKXXK 611
            PPPPPPP +  K
Sbjct: 1096 PPPPPPPAEVEK 1107



 Score = 21.4 bits (43), Expect(2) = 1.7
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +3

Query: 558  PGXGXXPPPPPP 593
            P     PPPPPP
Sbjct: 1091 PSAVPPPPPPPP 1102


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 16/51 (31%), Positives = 16/51 (31%)
 Frame = +2

Query: 554  PPGXRGXXPPPPPPXKXXKTPPPXRRGXXAXXXXPPPPGXXXXXXXXXPXP 706
            PP      PPPPP       PPP      A     PPP          P P
Sbjct: 1699 PPQMSAPTPPPPP---MSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 576 PPPPPPPXKXXKPPPXRXXG 635
           PPPPPPP      P  R  G
Sbjct: 371 PPPPPPPELLNHSPKSRPLG 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,537,046
Number of Sequences: 5004
Number of extensions: 19675
Number of successful extensions: 303
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)