Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_C22
(876 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 198 8e-52
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 142 6e-35
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 103 3e-23
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 102 8e-23
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 101 1e-22
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 100 2e-22
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 97 3e-21
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 93 6e-20
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 92 1e-19
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 91 1e-19
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 87 3e-18
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 85 9e-18
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 84 2e-17
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 82 1e-16
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 80 5e-16
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 78 1e-15
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 71 2e-13
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 67 3e-12
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 66 8e-12
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 61 2e-10
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 58 1e-09
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 54 2e-08
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 51 2e-07
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 37 0.004
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 34 0.023
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 32 0.12
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 32 0.12
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce... 30 0.50
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 30 0.50
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 27 2.7
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 27 3.5
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 27 3.5
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 27 4.6
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 27 4.6
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 6.1
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces... 26 6.1
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom... 26 6.1
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p... 26 8.1
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 26 8.1
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 198 bits (483), Expect = 8e-52
Identities = 94/170 (55%), Positives = 129/170 (75%), Gaps = 4/170 (2%)
Frame = +3
Query: 150 EKMTADKE--SYGDETNQDSEVEQTPTENVTEDTEDDKI--TFKDLGVVDVLCEACEELK 317
+K+T DK+ S + + + +EN D+++++ TFK+LGV+D LCEACE+L
Sbjct: 6 KKLTEDKKNSSLNKKIETSNSSSEKSSENNNGDSQNNEAPKTFKELGVIDELCEACEKLG 65
Query: 318 WKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYFALILTPTRE 497
+K P+ IQ+EAIPV L +D+IGLA+TGSGKT AFALP++Q L NP +FA++L PTRE
Sbjct: 66 FKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTRE 125
Query: 498 LAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGKI 647
LA+QISEQFEA+G SIGV+ VIVGGMDMV QA+ LSKKPH+++ TPG++
Sbjct: 126 LAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRL 175
Score = 44.4 bits (100), Expect = 2e-05
Identities = 18/23 (78%), Positives = 22/23 (95%)
Frame = +2
Query: 650 VDHLENTKGFNLRALKYLVMDEA 718
+DHLENTKGF+L+ LKYL+MDEA
Sbjct: 176 MDHLENTKGFSLKNLKYLIMDEA 198
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 142 bits (344), Expect = 6e-35
Identities = 69/135 (51%), Positives = 98/135 (72%)
Frame = +3
Query: 243 TEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAF 422
+E + +F DLG+ L + + L +P+ IQ+ I L G++ IG A+TGSGKT AF
Sbjct: 2 SEHTRKSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAF 61
Query: 423 ALPILQALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALM 602
ALPI++ ++P FALILTPTRELA QI EQF ALGA++ +K A+IVGGMDM+ Q++
Sbjct: 62 ALPIIEKWSKDPSGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSID 121
Query: 603 LSKKPHIIIATPGKI 647
LSK+PH+++ATPG++
Sbjct: 122 LSKRPHVVVATPGRL 136
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 103 bits (248), Expect = 3e-23
Identities = 52/145 (35%), Positives = 87/145 (60%), Gaps = 8/145 (5%)
Frame = +3
Query: 237 EDTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTG 416
+D + +++ G+ + + +++ +K+PS IQ+ AIPV L KD+IG+AETGSGKT
Sbjct: 242 DDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTA 301
Query: 417 AFALPILQALLENPQRY--------FALILTPTRELAFQISEQFEALGASIGVKCAVIVG 572
AF +P++ A+ + P +A++L PTRELA QI + +G +C +VG
Sbjct: 302 AFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVG 361
Query: 573 GMDMVAQALMLSKKPHIIIATPGKI 647
G Q+ +S+ HI++ATPG++
Sbjct: 362 GHAFEEQSFQMSQGAHIVVATPGRL 386
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 102 bits (244), Expect = 8e-23
Identities = 51/112 (45%), Positives = 72/112 (64%), Gaps = 2/112 (1%)
Frame = +3
Query: 318 WKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYF--ALILTPT 491
+ KP IQ IP A +G DIIG A+TGSGKT AF +PIL+ L N + AL++ PT
Sbjct: 142 FSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQALVVAPT 201
Query: 492 RELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGKI 647
RELA QI + FE + S ++ I GG+ + Q +L+K PH+++ATPG++
Sbjct: 202 RELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRL 253
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 101 bits (242), Expect = 1e-22
Identities = 56/161 (34%), Positives = 89/161 (55%)
Frame = +3
Query: 165 DKESYGDETNQDSEVEQTPTENVTEDTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQK 344
D+ES+ + + TE+VT+ + F+D + L E +++PS IQ+
Sbjct: 16 DRESFKGQMKAQPVDMRPKTEDVTKTRGTE---FEDYYLKRELLMGIFEAGFERPSPIQE 72
Query: 345 EAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYFALILTPTRELAFQISEQF 524
E+IP+AL G+DI+ A+ G+GKT AF +P L+ + + LIL PTRELA Q S+
Sbjct: 73 ESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVC 132
Query: 525 EALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGKI 647
+ LG + VK V GG + + L+ HI++ TPG++
Sbjct: 133 KTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRV 173
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 100 bits (240), Expect = 2e-22
Identities = 52/131 (39%), Positives = 79/131 (60%), Gaps = 3/131 (2%)
Frame = +3
Query: 261 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQ 440
+F+ + + + + L ++ P++IQ + IP+ALLGKDI+G A TGSGKT AF +PIL+
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILE 319
Query: 441 ALLENPQRY---FALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSK 611
LL P++ LIL PTRELA Q + + + + +GG+ + Q L K
Sbjct: 320 RLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRK 379
Query: 612 KPHIIIATPGK 644
+P I+IATPG+
Sbjct: 380 RPDIVIATPGR 390
Score = 33.1 bits (72), Expect = 0.053
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +2
Query: 647 WVDHLENTKGFNLRALKYLVMDEAGXNSPHGFS 745
++DH+ N++GF + ++ +VMDEA GF+
Sbjct: 391 FIDHMRNSQGFTVENIEIMVMDEADRMLEDGFA 423
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 97.1 bits (231), Expect = 3e-21
Identities = 51/130 (39%), Positives = 79/130 (60%), Gaps = 3/130 (2%)
Frame = +3
Query: 264 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 443
F+ +G+ L A + +K P+ IQ++ IP+ L G+D++G+A TGSGKT AF +P+++
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 444 L---LENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKK 614
L L N ALIL+P RELA Q + + ++ IVGG+ + Q +LS K
Sbjct: 131 LKSTLANSNTR-ALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGK 189
Query: 615 PHIIIATPGK 644
P I++ATPG+
Sbjct: 190 PDIVVATPGR 199
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 92.7 bits (220), Expect = 6e-20
Identities = 58/177 (32%), Positives = 103/177 (58%), Gaps = 5/177 (2%)
Frame = +3
Query: 132 QNNDNLEKMTADKESYG-DETNQDSEVEQTPTENVTEDTEDDKITFKDLGVVDVLCEACE 308
+N D + + + ES D N+D V+++ N + ++ +K F DL + + + +A +
Sbjct: 48 ENEDADQNTSVESESEELDNENEDERVQKSVNLNASSTSDIEK--FSDLQLSENIQKAIK 105
Query: 309 ELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALP---ILQALLENPQR-YFAL 476
E+ ++ ++IQK +IP L G+D++G A+TGSGKT AF +P +L AL P+ +
Sbjct: 106 EMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVI 165
Query: 477 ILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGKI 647
I++PTRELA QI + L +++GG + A+A L K ++++ATPG++
Sbjct: 166 IISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLVKGVNLLVATPGRL 222
Score = 35.5 bits (78), Expect = 0.010
Identities = 17/31 (54%), Positives = 21/31 (67%)
Frame = +2
Query: 650 VDHLENTKGFNLRALKYLVMDEAGXNSPHGF 742
+DHL+NTKGF R L+ LV+DEA GF
Sbjct: 223 LDHLQNTKGFVFRNLRSLVIDEADRILEIGF 253
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 91.9 bits (218), Expect = 1e-19
Identities = 55/141 (39%), Positives = 78/141 (55%), Gaps = 8/141 (5%)
Frame = +3
Query: 246 EDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFA 425
E + TF D + L A + +++KP+ +Q E IP+AL GKD++ A TGSGKT A+
Sbjct: 10 ESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYL 69
Query: 426 LPILQALL------ENPQRYFALILTPTRELAFQISEQFEALGA--SIGVKCAVIVGGMD 581
+PIL+ LL EN + FAL+L PTRELA Q+ E L A S ++ +
Sbjct: 70 IPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSS 129
Query: 582 MVAQALMLSKKPHIIIATPGK 644
Q +L P I+IATP +
Sbjct: 130 DTVQRPLLLDLPDIVIATPSR 150
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 91.5 bits (217), Expect = 1e-19
Identities = 55/167 (32%), Positives = 87/167 (52%), Gaps = 4/167 (2%)
Frame = +3
Query: 159 TADKESYGDETNQDSEVEQTPTENVTEDTEDDKITFKDLGVVDVLCEACEELK-WKKPSK 335
+A+ ++ DE D +++ + ++ + +DV + E LK +K+P+
Sbjct: 131 SANASNHNDEEAYDRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKNYKEPTP 190
Query: 336 IQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQ---ALLENPQRYFALILTPTRELAF 506
IQ P L G+D++G+AETGSGKT AF +P LQ L +N L+++PTRELA
Sbjct: 191 IQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAI 250
Query: 507 QISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGKI 647
Q E +L +K V+ GG QA +K +II TPG++
Sbjct: 251 QTYENLNSLIQGTNLKAVVVYGGAPKSEQA-RAAKNASVIIGTPGRL 296
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 87.0 bits (206), Expect = 3e-18
Identities = 48/142 (33%), Positives = 80/142 (56%), Gaps = 1/142 (0%)
Frame = +3
Query: 225 ENVTEDTEDDKI-TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETG 401
++V E D+ I TF D+ + L +++PS IQ+ AI L +D++ A++G
Sbjct: 7 DSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSG 66
Query: 402 SGKTGAFALPILQALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMD 581
+GKT F++ +LQ + + ++ ALIL PTRELA QI + ALG + V+C +GG
Sbjct: 67 TGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTL 126
Query: 582 MVAQALMLSKKPHIIIATPGKI 647
+ L H+++ TPG++
Sbjct: 127 VRDDMAALQAGVHVVVGTPGRV 148
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 85.4 bits (202), Expect = 9e-18
Identities = 46/134 (34%), Positives = 78/134 (58%), Gaps = 5/134 (3%)
Frame = +3
Query: 261 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL- 437
TF++ G + + + ++L ++ P+ IQ++A P+A+ G+D++G++ TGSGKT ++ LP +
Sbjct: 123 TFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIV 182
Query: 438 ----QALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALML 605
Q LL L+L PTRELA QI ++ G S ++ + GG+ Q L
Sbjct: 183 HINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDL 242
Query: 606 SKKPHIIIATPGKI 647
+ I IATPG++
Sbjct: 243 IRGVEICIATPGRL 256
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 84.2 bits (199), Expect = 2e-17
Identities = 48/144 (33%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Frame = +3
Query: 225 ENVTEDTEDDK---ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAE 395
ENV T +D +F+++ + + L ++ PS +Q AI G+D+I A+
Sbjct: 7 ENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQ 66
Query: 396 TGSGKTGAFALPILQALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGG 575
+G+GKT F++ ILQ++ + + ALIL+PTRELA QI ALG + V+C +GG
Sbjct: 67 SGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGG 126
Query: 576 MDMVAQALMLSKKPHIIIATPGKI 647
+ L H++ TPG++
Sbjct: 127 TSVGNDIKKLDYGQHVVSGTPGRV 150
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 81.8 bits (193), Expect = 1e-16
Identities = 44/117 (37%), Positives = 68/117 (58%), Gaps = 5/117 (4%)
Frame = +3
Query: 312 LKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL-----QALLENPQRYFAL 476
L ++KP+ IQ +AIP G+D+IG+A+TGSGKT AF LP+ Q L+ + A+
Sbjct: 436 LGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAI 495
Query: 477 ILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGKI 647
I+TPTRELA QI + + + ++ GG + Q L + I++ TPG++
Sbjct: 496 IMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCTPGRM 552
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 79.8 bits (188), Expect = 5e-16
Identities = 45/132 (34%), Positives = 72/132 (54%), Gaps = 4/132 (3%)
Frame = +3
Query: 264 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 443
F+D + L A + ++ PS++Q+ IP ++LG D++ A++G GKT F L LQ
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQ 112
Query: 444 LLENPQRYFALILTPTRELAFQISEQFEALGASI-GVKCAVIVGGMDMVAQALML---SK 611
+ L+L TRELAFQI ++ + V+ AV GG+++ SK
Sbjct: 113 IEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSK 172
Query: 612 KPHIIIATPGKI 647
PHI++ATPG++
Sbjct: 173 SPHIVVATPGRL 184
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 78.2 bits (184), Expect = 1e-15
Identities = 52/179 (29%), Positives = 92/179 (51%), Gaps = 5/179 (2%)
Frame = +3
Query: 126 IPQNNDNLEKMTADKESYGDETNQDSEVEQTPTE-NVTEDTEDDKITFKDLGVVDVLCEA 302
+P+N + +K+ ++ E+E+ ++ +T D F +L + A
Sbjct: 1 MPKNRTGRSREAREKK----RKEEEEEIEELNSQIEALSETVDH---FAELPLTQPTKSA 53
Query: 303 CEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYF---- 470
+ + ++IQK+ IP AL G+DI+G A+TGSGKT AF +P+++ L
Sbjct: 54 LKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLG 113
Query: 471 ALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGKI 647
AL+++PTRELA Q E +G +I+GG + + LS+ +I++ TPG++
Sbjct: 114 ALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLSRM-NILVCTPGRL 171
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 71.3 bits (167), Expect = 2e-13
Identities = 45/131 (34%), Positives = 77/131 (58%), Gaps = 2/131 (1%)
Frame = +3
Query: 261 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLG--KDIIGLAETGSGKTGAFALPI 434
+F++L + L + +K++KPSKIQ++A+P+ L +++IG +++G+GKT AFAL +
Sbjct: 115 SFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTM 174
Query: 435 LQALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKK 614
L + + + A+ L P+RELA QI + +G VK A G D V + + +
Sbjct: 175 LSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTA--FGIKDSVPKGAKIDAQ 232
Query: 615 PHIIIATPGKI 647
I+I TPG +
Sbjct: 233 --IVIGTPGTV 241
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 67.3 bits (157), Expect = 3e-12
Identities = 44/122 (36%), Positives = 65/122 (53%), Gaps = 2/122 (1%)
Frame = +3
Query: 288 VLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQAL-LENPQR 464
+LCE ++ + + IQ+ AIP +D++ A TGSGKT A+ PILQ L L P
Sbjct: 56 ILCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGG 115
Query: 465 YFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQ-ALMLSKKPHIIIATPG 641
Y A+I+ PTREL QI Q E L +K + + + + A L +K + I TP
Sbjct: 116 YRAIIVAPTRELCEQIYRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKYDMCIGTPM 175
Query: 642 KI 647
++
Sbjct: 176 RL 177
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 65.7 bits (153), Expect = 8e-12
Identities = 40/128 (31%), Positives = 64/128 (50%), Gaps = 18/128 (14%)
Frame = +3
Query: 318 WKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLEN-------------- 455
+ +P+ +QK +IP+ G+D++ A+TGSGKT F PIL +
Sbjct: 189 YTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMG 248
Query: 456 --PQRYF--ALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHI 623
P++ + LIL PTREL QI E+ V+ + GG D+ AQ + + +
Sbjct: 249 YRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDL 308
Query: 624 IIATPGKI 647
+ ATPG++
Sbjct: 309 LSATPGRL 316
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 60.9 bits (141), Expect = 2e-10
Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 16/177 (9%)
Frame = +3
Query: 165 DKESYGDETNQDSEVEQTPTENVTEDTEDDKITFKDLGVVDVLCEACEELKWKK----PS 332
D E + + Q+ E Q T++ + I + V + + + L K P+
Sbjct: 104 DSEHFSQDVGQNLEDNQISNIGTTKEASNAPIKTTNFAGVQLDTQLADHLNNKMNISAPT 163
Query: 333 KIQKEAIPVALL--GKDIIGLAETGSGKTGAFALPILQALLENPQR-------YFALILT 485
IQ +P L KD A+TGSGKT A+ LPI+Q L+ P+ +A+I+
Sbjct: 164 AIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMA 223
Query: 486 PTRELAFQISEQFEALG---ASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGKI 647
PTREL QI L S + ++GG ++ + K +I+I TPG++
Sbjct: 224 PTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGTPGRL 280
Score = 29.1 bits (62), Expect = 0.87
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 653 DHLENTKGFNLRALKYLVMDEAGXNSPHGFSK 748
DHLENT+ ++ ++++V+DE GF +
Sbjct: 282 DHLENTEALDVSQVRWVVLDEGDRLMDMGFEE 313
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 58.4 bits (135), Expect = 1e-09
Identities = 44/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Frame = +3
Query: 258 ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL 437
++F+ + + L A +KK + +Q AIP+ L KD++ A TGSGKT A+ LP
Sbjct: 1 MSFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCF 60
Query: 438 QALLE---NPQRYFALILTPTRELAFQI--------SEQFEALGASIGVKCAVIVGGMDM 584
+ + ALI+ PTRELA QI + Q ++L + + +GG
Sbjct: 61 DKVTRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGT 120
Query: 585 VAQ--ALMLSKKPHIIIATPGKI 647
+ A K P ++I TPG++
Sbjct: 121 LTNDLASFREKNPSVVIGTPGRL 143
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 54.4 bits (125), Expect = 2e-08
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 6/92 (6%)
Frame = +3
Query: 390 AETGSGKTGAFALPILQALLE-----NPQRYFALILTPTRELAFQISEQFEALGASIGVK 554
A+TG+GKT AF L + +L+ N + ++IL+PTRELA QI E+ L G++
Sbjct: 83 AKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGIR 142
Query: 555 CAVIVGGMDMVAQALMLSK-KPHIIIATPGKI 647
+ +GG + + + + +++IATPG++
Sbjct: 143 VSYAIGGNSKMREENAIRRGNANLLIATPGRL 174
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 51.2 bits (117), Expect = 2e-07
Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Frame = +3
Query: 354 PVALLGKDIIGLAETGSGKTGAFALPILQALLENP-QRYFALILTPTRELAFQISEQFEA 530
P+ G D+ A TGSGKT ++ +PI+Q L R +++ PTREL Q+++ FE
Sbjct: 168 PMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTFEY 227
Query: 531 LGASIGVKCAVIVGGMDMVAQALMLSKKPH-----IIIATPGKI 647
+ G++ G + + L+ + ++++TPG++
Sbjct: 228 YMSGAGLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTPGRL 271
Score = 35.9 bits (79), Expect = 0.008
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 650 VDHLENTKGFNLRALKYLVMDEAGXNSPHGFSKW 751
VDH+ N + F+L+ L+Y+V+DEA F W
Sbjct: 272 VDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDW 305
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 36.7 bits (81), Expect = 0.004
Identities = 24/61 (39%), Positives = 34/61 (55%)
Frame = +3
Query: 321 KKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYFALILTPTREL 500
+K K Q +AI G +I T SGK+ + +PILQ+LLE+ Q A + PT+ L
Sbjct: 310 EKTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSLLEDNQS-TAFFVFPTKSL 368
Query: 501 A 503
A
Sbjct: 369 A 369
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 34.3 bits (75), Expect = 0.023
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 9/119 (7%)
Frame = +3
Query: 330 SKIQKEAIPVAL-LGKDIIGLAETGSGKTGAFALPILQALLE--------NPQRYFALIL 482
++IQ P+A ++I+ A TG+GKT L IL L + N Q + + +
Sbjct: 521 NRIQSHLYPIAFGTDENILLCAPTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKIVYI 580
Query: 483 TPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGKIGLTT 659
P + L ++ F ++ A + G + Q + + II+ TP K + T
Sbjct: 581 APLKALVQEMVNNFSKRLTPYNIRVAELTGDSQLTKQQI---SETQIIVTTPEKWDIIT 636
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 31.9 bits (69), Expect = 0.12
Identities = 33/147 (22%), Positives = 67/147 (45%), Gaps = 17/147 (11%)
Frame = +3
Query: 270 DLGVVDVLCEACEELKWKKPSKIQKEAIPVAL-LGKDIIGLAETGSGKTGAFALPILQAL 446
++ +D+LC L ++ ++IQ P+A ++++ A TG+GKT L +LQ +
Sbjct: 260 EISSMDILCRKTF-LSYQTLNRIQSLVYPIAYKTNENMLICAPTGAGKTDVALLAMLQTI 318
Query: 447 ---------------LENPQRYFALI-LTPTRELAFQISEQFEALGASIGVKCAVIVGGM 578
L+ + F ++ + P + LA ++ E+ A +G+K + G M
Sbjct: 319 SNYVESMNLMDESEPLDVHRDDFKIVYIAPMKALAAEVVEKMGKRLAWLGLKTRELTGDM 378
Query: 579 DMVAQALMLSKKPHIIIATPGKIGLTT 659
+ + + I++ TP K + T
Sbjct: 379 QLTKTEI---AETQILVTTPEKWDVVT 402
Score = 27.1 bits (57), Expect = 3.5
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Frame = +3
Query: 390 AETGSGKTGAFALPILQALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIV 569
A TGSGKT A L +AL P+ I + ++ + L +G+ +
Sbjct: 1157 APTGSGKTMAAELATWRALHNYPKSKVVYIAPMKALVKERVKDWGHRLVEPMGISMIELT 1216
Query: 570 GGMDMVAQALMLSKKPHIIIATPGK-IGLT-TWR 665
G + +A+ +III TP K G+T +W+
Sbjct: 1217 GDTNPDVKAV---TNANIIITTPEKWDGITRSWK 1247
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 31.9 bits (69), Expect = 0.12
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +3
Query: 333 KIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLE-NPQRYFALILTPTREL 500
K Q EAI L GKD+ L TG GK+ + LP A++E R L+++P L
Sbjct: 522 KNQLEAINGTLSGKDVFILMPTGGGKSLCYQLP---AVIEGGASRGVTLVISPLLSL 575
>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 563
Score = 29.9 bits (64), Expect = 0.50
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +3
Query: 168 KESYGDETNQDSEVEQTPTENVTEDTEDD 254
+ES G T +SEV QTPT +V E+ ED+
Sbjct: 38 EESAGQSTGTESEVIQTPT-SVEENNEDE 65
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 29.9 bits (64), Expect = 0.50
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 129 PQNNDNLEKMTADK-ESYGDETNQDSEVEQTPTENVTEDTEDDKITFKDLGVVD 287
P +N +K A K E G+E + ++E ++ +E +E ED+ + + V+D
Sbjct: 350 PDYEENEKKYDAIKHEILGEEDDDENEEDEEDSEETSESEEDESVNDEKPQVID 403
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 27.5 bits (58), Expect = 2.7
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Frame = +3
Query: 186 ETNQDSEVEQTPTENVTEDTEDDKITFKDLGVVDVLCEACEELKWKKPSKI--QKEAIPV 359
ET +S +E ENV D ED++I F + + V E + KP + QK+ +
Sbjct: 989 ETLTNSLMEDVGPENVDMDIEDNEI-FTNQSTMSVPSMLVENEESPKPDEYIDQKDKVQS 1047
Query: 360 ALL-GKDIIGL 389
LL GK +G+
Sbjct: 1048 PLLNGKSPVGV 1058
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 27.1 bits (57), Expect = 3.5
Identities = 16/68 (23%), Positives = 33/68 (48%)
Frame = +3
Query: 327 PSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYFALILTPTRELAF 506
P + Q+E + + + + +A T SGKT + ++ +L + + + PT+ L
Sbjct: 736 PDEWQRETLDILDRDESVFVVAPTSSGKT-FISFYAMEKVLRDNDDGVVIYVAPTKALVN 794
Query: 507 QISEQFEA 530
Q+S + A
Sbjct: 795 QLSAEVYA 802
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 27.1 bits (57), Expect = 3.5
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 168 KESYGDETNQDSEVEQTPTENVTEDTEDDKITFKDLGVVDVLCEACEE 311
KES G+++N EV + E +EDD+ T+++ L EA EE
Sbjct: 136 KESLGEKSNDVKEVNKAMHEKWGSLSEDDRKTYEE--EASKLREAYEE 181
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 26.6 bits (56), Expect = 4.6
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Frame = -2
Query: 596 SLCHHVHTANYYCTFYTYACTKCFKLF*YLKCQFPCWSKY----KCKISLWVL-**CLKY 432
+L +H ++ N T T C KC+ L + C F C S + C + L V+ C K
Sbjct: 1235 TLVNHCNSCNS-TTSNTRICEKCYSLVPRMSCTFCCLSIHGLCIVCGLCLHVMHEDCYKE 1293
Query: 431 GQGKGTCLTRTC 396
G ++++C
Sbjct: 1294 WFSNGDSISQSC 1305
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 26.6 bits (56), Expect = 4.6
Identities = 17/38 (44%), Positives = 18/38 (47%)
Frame = +3
Query: 396 TGSGKTGAFALPILQALLENPQRYFALILTPTRELAFQ 509
TGSGKT F I A P LIL +ELA Q
Sbjct: 55 TGSGKTALFPHFIKYAPTLRPNSEQCLILVHRKELALQ 92
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 26.2 bits (55), Expect = 6.1
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -1
Query: 180 HSFPCLQSFSLNYHCFGEYKKDANIESMCLKFEGYAQG--GATPNTS 46
HS+ CL +FS N F EY + E+ + Y G ATP++S
Sbjct: 130 HSYDCLWNFSCN--SFPEYSSYSASETSSVASYSYYSGPNPATPSSS 174
>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 26.2 bits (55), Expect = 6.1
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = +3
Query: 114 RLFCIPQNNDNLEKMTADKESYGDETNQDSEVEQTPTENVTEDTEDDK 257
RL + N +LE + + DSE E + TE EDDK
Sbjct: 82 RLAFSKELNSSLENDEESSQQEDSSSKSDSEEESSMEPKTTEYDEDDK 129
>SPCC663.10 |||methyltransferase, DUF1613 family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 502
Score = 26.2 bits (55), Expect = 6.1
Identities = 22/95 (23%), Positives = 35/95 (36%)
Frame = +3
Query: 222 TENVTEDTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETG 401
T+ + + EDD I K V + L E + +W I + A + + ++ L E
Sbjct: 68 TDIILDSQEDDSILNKQKSVFENLDERYQISRWIDRRIIPRNTNLDATMDQTVVVLHEKL 127
Query: 402 SGKTGAFALPILQALLENPQRYFALILTPTRELAF 506
LP L LE P + +AF
Sbjct: 128 ENDRILMYLPHLDKSLEQPYNHLPYYHPAVAGIAF 162
>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 608
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = +3
Query: 183 DETNQDSEVEQTPTE--NVTEDTEDDK 257
D TN D E+E+ TE N+T + E DK
Sbjct: 559 DGTNNDVEIEKNSTEIDNITFNDEADK 585
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.8 bits (54), Expect = 8.1
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Frame = +3
Query: 129 PQNNDNLEKMTADKESYGDETNQDSEVEQTPTENVTEDTEDDK---ITFKDLGVVDVLCE 299
P N+ +EK A+ E+ T D ++ + P + E+++DDK +D+G + E
Sbjct: 497 PATNEEVEKNNANSENANGLT--DEKIIEAPLD-TKENSDDDKPSPAAAEDIGTNGAIEE 553
Query: 300 ACEELKWKKPSKIQKEAIPVALLGKD 377
+ + +P K + + L K+
Sbjct: 554 IPQVSEVLEPEKAHTTNLQLNALDKE 579
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,558,805
Number of Sequences: 5004
Number of extensions: 77360
Number of successful extensions: 336
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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