Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_C22
         (876 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       93   4e-21
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   3.7  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    23   4.9  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 92.7 bits (220), Expect = 4e-21
 Identities = 53/150 (35%), Positives = 87/150 (58%), Gaps = 10/150 (6%)
 Frame = +3

Query: 228 NVTEDTEDDKI-TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGS 404
           NV+ D     I +F+  G+ +++ +  ++  +KKP+ +QK A+P+ + G+D++  A+TGS
Sbjct: 185 NVSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGS 244

Query: 405 GKTGAFALPILQALLEN------PQRYF---ALILTPTRELAFQISEQFEALGASIGVKC 557
           GKT AFA+PI+  LLE          Y     +I++PTREL  QI +Q      +  +K 
Sbjct: 245 GKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNSILKT 304

Query: 558 AVIVGGMDMVAQALMLSKKPHIIIATPGKI 647
            V  GG  ++ Q   LS   HI++ATPG++
Sbjct: 305 VVAYGGTSVMHQRGKLSAGCHILVATPGRL 334


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 578 HTANYYCTFYTYACTKCFK 522
           ++A++   F+   C KCFK
Sbjct: 362 YSADFRLAFWRLTCRKCFK 380


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -2

Query: 443 CLKYGQGKGTCLTRTCLCK 387
           CL  G+  G C    C+C+
Sbjct: 64  CLSLGKAGGHCEKGVCICR 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,983
Number of Sequences: 438
Number of extensions: 5508
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)