Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_C18
(850 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 36 0.031
07_03_1747 + 29188568-29188715,29188793-29189541 31 1.5
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 29 4.7
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 29 6.2
11_01_0113 + 881806-881996,882831-882921,883140-883255,884489-88... 29 6.2
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468... 28 8.2
07_01_0069 + 505291-505327,505726-505956,506317-506652,507025-50... 28 8.2
02_05_0686 - 30900748-30902167,30903442-30904742 28 8.2
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 8.2
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 28 8.2
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 36.3 bits (80), Expect = 0.031
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Frame = -3
Query: 308 HQPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQM-QGQVDYDFGVGGESRS 132
H P AAA P VP++ P L + S GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGGSHGL 65
Query: 131 YVARSESIMRDSDVAFSHSAALAIAQVRR 45
+ + + + D+++ L I RR
Sbjct: 66 HKSGTATTGLPFDISWRRQDRLQIVVSRR 94
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +1
Query: 361 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSSVLG 513
PPP TT++ V L TA + S + QF+C+ TTC + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 29.1 bits (62), Expect = 4.7
Identities = 16/48 (33%), Positives = 18/48 (37%)
Frame = -1
Query: 823 PXKXXXXPXPPGXGXFXGXGPGXPXEXQXPXXPRGKXAPAPQXRVPGA 680
P P PP G G G P P PR + P P + PGA
Sbjct: 361 PRPPGPGPGPPPPPGAAGRGGGGPPPPALPGGPRAR-GPPPFKKSPGA 407
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 206 VRVHRANTGRSSNELDRQTTELERRGVGLQHLAGVLGTL 322
V+ H R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>11_01_0113 +
881806-881996,882831-882921,883140-883255,884489-885260
Length = 389
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = -3
Query: 692 CXGGXFPXRHXGXCXRGXSTSPRSWLCXXXGQSRHIPRS*LEHTVYS 552
C GG P + G C S +P C Q HI + L + +YS
Sbjct: 67 CFGGRRPHPNRGRCRPNQSRAPIQSCCEVRQQGTHIRFAPLLNLIYS 113
>09_04_0190 -
15443764-15443838,15445360-15445458,15446396-15446891,
15449436-15449479,15449999-15450104,15450243-15450314,
15450474-15450588,15451182-15451407
Length = 410
Score = 28.3 bits (60), Expect = 8.2
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +2
Query: 212 VHRANTGRSSNELDRQTTELERRGVG 289
V+ A +SS+ L ++TTE++R G+G
Sbjct: 371 VNEAKETKSSSSLPQKTTEMQRSGIG 396
>07_01_0069 +
505291-505327,505726-505956,506317-506652,507025-507372,
507735-508594,508902-508971,509157-509371,509477-509537,
509606-509715,510644-510694,510794-510916
Length = 813
Score = 28.3 bits (60), Expect = 8.2
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -3
Query: 161 DFGVGGESRSYVARSESIMRDSDVAFSHSAALAIAQVRRNGNKNNISRR 15
D + ES + E ++RD+DVA S S V R K+ S+R
Sbjct: 125 DTDLANESGNGCTHGEGVLRDADVASSRSGNDLTPDVDRTLGKSKASKR 173
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +1
Query: 673 GNXPPXHAXGGPXPXXPGGXXXPXPP 750
G PP A G P P P G P PP
Sbjct: 343 GPPPPPPAKGPPPPPPPKGPSPPPPP 368
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 390 GRGERSPRRWLQPRLAVPRQASTSVPRTP 304
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -2
Query: 387 RGERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPTPLRSNS 265
R RSPRR P R + + R+PA S +P+R++S
Sbjct: 224 RDSRSPRRSASPPNGRNRSPTPNASRSPAPRDSRSPMRADS 264
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,333,838
Number of Sequences: 37544
Number of extensions: 584441
Number of successful extensions: 1757
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1746
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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