Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_C16
         (847 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029...    34   0.16 
07_03_1136 + 24218601-24218734,24218769-24219906                       30   2.0  
07_01_0479 + 3606663-3607448                                           30   2.7  
12_01_0524 - 4167867-4168445                                           29   3.5  
11_06_0610 - 25449085-25453284                                         29   6.2  
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321...    29   6.2  
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468...    28   8.1  
07_01_0809 - 6347986-6348048,6348460-6348571,6348956-6349041           28   8.1  
05_01_0141 - 937428-937717,938483-938705                               28   8.1  
04_01_0530 - 6928528-6929500,6929514-6930964                           28   8.1  
02_01_0003 + 13079-13610,14005-14312,14364-14549,14620-14707,148...    28   8.1  

>05_03_0366 -
           13102147-13102281,13102560-13102739,13102791-13102992,
           13104385-13104575
          Length = 235

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -1

Query: 361 HQPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQM-QGQVDYDFGVGG 197
           H P AAA  P VP++    P  L +   S GG GL   S S +  G  + D G+GG
Sbjct: 7   HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61


>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = +2

Query: 728 GXPPPGXGXGGRXXXVXGGGXXXWXXGRXPPG 823
           G PP G G GG      GGG      GR P G
Sbjct: 170 GRPPGGGGGGGGPGRAPGGGGGGGGPGRAPGG 201



 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = +2

Query: 737 PPGXGXGGRXXXVXGGGXXXWXXGRXPPG 823
           PPG G GG      GGG      GR P G
Sbjct: 160 PPGGGRGGALGRPPGGGGGGGGPGRAPGG 188


>07_01_0479 + 3606663-3607448
          Length = 261

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -2

Query: 822 PGGXRPXXQXXXPPPXTXXXRPPXPXPGGGXPGR 721
           PGG  P  +   PPP      PP P PG   PG+
Sbjct: 225 PGGPPPGMRPGMPPPPFRPGMPP-PPPGPQQPGQ 257


>12_01_0524 - 4167867-4168445
          Length = 192

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 22/72 (30%), Positives = 32/72 (44%)
 Frame = -1

Query: 358 QPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVGGGVPIVR 179
           QPS+AA  P   + +    +   +  YSH G    +   S + G  +   G GGG P V 
Sbjct: 104 QPSSAAVAPLPSSTNLKSAVRSAMGSYSHSGTRRVHFGDSTVLG--EKAAGAGGGEPAV- 160

Query: 178 CEERVDHEGQ*C 143
            EE  + E + C
Sbjct: 161 VEEVEEEEEKEC 172


>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/45 (31%), Positives = 16/45 (35%)
 Frame = -2

Query: 822 PGGXRPXXQXXXPPPXTXXXRPPXPXPGGGXPGRXXGTLPXELXP 688
           P    P  +   P P +    PP P P G  P     T P E  P
Sbjct: 607 PPKSTPPAEKSPPTPESKASSPPPPAPEGHTPSPPESTPPSEKSP 651



 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/45 (31%), Positives = 16/45 (35%)
 Frame = -2

Query: 822 PGGXRPXXQXXXPPPXTXXXRPPXPXPGGGXPGRXXGTLPXELXP 688
           P    P  +   P P +    PP P P G  P     T P E  P
Sbjct: 640 PPESTPPSEKSPPTPESKASSPPPPTPEGHTPSPPKSTPPTEKSP 684



 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/45 (31%), Positives = 16/45 (35%)
 Frame = -2

Query: 822 PGGXRPXXQXXXPPPXTXXXRPPXPXPGGGXPGRXXGTLPXELXP 688
           P    P  +   P P +    PP P P G  P     T P E  P
Sbjct: 673 PPKSTPPTEKSPPTPESESSSPPPPAPEGHMPSPPKSTPPVEKSP 717


>11_06_0411 -
           23230580-23230795,23231407-23231862,23232142-23232195,
           23232251-23232367
          Length = 280

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 259 VRVHRANTGRSSNELDRQTTELERRGVGLQHLAGVLGTL 375
           V+ H     R S EL+RQ  ELER+G  L+   G L  +
Sbjct: 89  VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127


>09_04_0190 -
           15443764-15443838,15445360-15445458,15446396-15446891,
           15449436-15449479,15449999-15450104,15450243-15450314,
           15450474-15450588,15451182-15451407
          Length = 410

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +1

Query: 265 VHRANTGRSSNELDRQTTELERRGVG 342
           V+ A   +SS+ L ++TTE++R G+G
Sbjct: 371 VNEAKETKSSSSLPQKTTEMQRSGIG 396


>07_01_0809 - 6347986-6348048,6348460-6348571,6348956-6349041
          Length = 86

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = -3

Query: 440 AESVVPRRWLQPRLAVPRQASTSVPRTPAKCCSPTPLRSNSVVCRSNSFED 288
           AE+ VP   ++P+++   + S +       CCS      +++ C    FED
Sbjct: 2   AETSVPNLGMKPKIS--ERTSNTKATMGTSCCSYNTCEDSTIKCTMTQFED 50


>05_01_0141 - 937428-937717,938483-938705
          Length = 170

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = -2

Query: 834 GGXWPGGXRPXXQXXXPPPXTXXXRPPXPXPGGG 733
           GG   G   P  Q   PPP T    PP    GGG
Sbjct: 24  GGGGHGYPYPPQQGYYPPPPTAYPPPPPAGYGGG 57


>04_01_0530 - 6928528-6929500,6929514-6930964
          Length = 807

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +1

Query: 94  VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 234
           +SP+LCY+ C   RK+       +L+  +  SGLPP++   S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515


>02_01_0003 +
           13079-13610,14005-14312,14364-14549,14620-14707,
           14807-14887,14980-15044,15357-15497,15578-15694,
           15995-16237,16326-16383,18127-18224
          Length = 638

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 17/49 (34%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
 Frame = +2

Query: 689 GXSSXGXVPXXLPGXP-PPGXGXGGRXXXVXGGGXXXWXXGRXPPGXXP 832
           G S  G  P  +PG   P G   GG    + GGG      G  P G  P
Sbjct: 525 GASPRGGFPGGMPGGGFPGGMPGGGFPGGMPGGGFPGGMPGGFPGGAMP 573


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,441,467
Number of Sequences: 37544
Number of extensions: 518781
Number of successful extensions: 1876
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1842
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)