Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_C15
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ...    28   1.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.0  
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce...    26   6.8  

>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 324

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 4   WDDLFMEEIVPLXVSAASAIPSLVNAFSSSKPPQTD 111
           W D+F  + +P+  ++A  IPSL  A   SK P T+
Sbjct: 239 WFDIF--DFIPMIFTSALLIPSLYPALERSKLPFTE 272


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 17/54 (31%), Positives = 17/54 (31%)
 Frame = +3

Query: 528  PGXXVINPX*XPXSXXXPPXXXPXPKXPXPXXKXFPPGXXPPXXXXXPXXFSPP 689
            P   V  P   P S   P    P P  P P     PP   PP     P    PP
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTP--PPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 357

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 100 GVWKKRKH*PRREWPKRQKRXKAQF 26
           G WKK +   + EW K ++  KA++
Sbjct: 119 GEWKKAREEDKAEWKKAREEDKAEW 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,126,758
Number of Sequences: 5004
Number of extensions: 32896
Number of successful extensions: 93
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)