Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_C15
(768 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 33 0.33
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 32 0.58
07_01_0373 + 2783596-2784933 31 0.77
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 29 3.1
12_02_1174 - 26696869-26698191 29 5.4
05_01_0142 - 940421-940701,941262-941574 29 5.4
07_03_0560 + 19479597-19480667 28 7.1
03_01_0515 - 3864796-3865425 28 7.1
01_01_0070 - 542603-542686,542803-543441 28 7.1
11_06_0610 - 25449085-25453284 28 9.4
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 28 9.4
08_01_0059 - 394001-394708 28 9.4
04_03_0904 + 20717005-20718087 28 9.4
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 32.7 bits (71), Expect = 0.33
Identities = 20/63 (31%), Positives = 21/63 (33%), Gaps = 5/63 (7%)
Frame = +3
Query: 549 PX*XPXSXXXPPXXXPXPKXPXPXXKXFPP-----GXXPPXXXXXPXXFSPPXXGXXXXG 713
P P + PP P P P K PP G PP P PP G G
Sbjct: 317 PPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGG 376
Query: 714 XPP 722
PP
Sbjct: 377 PPP 379
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 31.9 bits (69), Expect = 0.58
Identities = 18/70 (25%), Positives = 21/70 (30%)
Frame = +3
Query: 477 PYPSINXGGPPXX*TXXPGXXVINPX*XPXSXXXPPXXXPXPKXPXPXXKXFPPGXXPPX 656
P P+ PP P I+P P PP P P P P PP
Sbjct: 395 PAPTFTYSSPPPPPLYYPPPPDISPSPPPSVTPLPPVVYPSPPEVTPSPPEIAPYPSPPE 454
Query: 657 XXXXPXXFSP 686
P +P
Sbjct: 455 IVPSPPEITP 464
>07_01_0373 + 2783596-2784933
Length = 445
Score = 31.5 bits (68), Expect = 0.77
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = -2
Query: 92 EEEKALTKEGMAEAAETXKGTISSMNRS 9
E+++ LTK G + +ET KG++ S++RS
Sbjct: 151 EQQQQLTKSGCSSTSETSKGSVLSLSRS 178
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/70 (25%), Positives = 18/70 (25%)
Frame = +3
Query: 549 PX*XPXSXXXPPXXXPXPKXPXPXXKXFPPGXXPPXXXXXPXXFSPPXXGXXXXGXPPXX 728
P P PP P P PP PP P PP G PP
Sbjct: 1137 PPPPPLPEGPPPLPSDSPPCQPPLPPSPPPATPPPPPPLSPSLPPPPPPPPLPSGPPPQP 1196
Query: 729 XXXXKXXXPP 758
PP
Sbjct: 1197 APPPLPIQPP 1206
>12_02_1174 - 26696869-26698191
Length = 440
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/54 (29%), Positives = 16/54 (29%)
Frame = +3
Query: 561 PXSXXXPPXXXPXPKXPXPXXKXFPPGXXPPXXXXXPXXFSPPXXGXXXXGXPP 722
P PP P P P P PP PP P PP PP
Sbjct: 143 PVKPQPPPSLPPPPPPPPPPPPPRPPSVKPPVVQPKPQ--PPPSLQPPSPPPPP 194
Score = 28.3 bits (60), Expect = 7.1
Identities = 20/71 (28%), Positives = 21/71 (29%)
Frame = +3
Query: 477 PYPSINXGGPPXX*TXXPGXXVINPX*XPXSXXXPPXXXPXPKXPXPXXKXFPPGXXPPX 656
P PS+ PP P V P P P P P P P PG P
Sbjct: 181 PPPSLQPPSPPPPPPTRP-PSVKPPVVQPKPQPPPTLPPPSPPPPPPTVPPRTPGDTPAV 239
Query: 657 XXXXPXXFSPP 689
P PP
Sbjct: 240 VEPKPQPPPPP 250
Score = 27.9 bits (59), Expect = 9.4
Identities = 21/82 (25%), Positives = 24/82 (29%)
Frame = +3
Query: 477 PYPSINXGGPPXX*TXXPGXXVINPX*XPXSXXXPPXXXPXPKXPXPXXKXFPPGXXPPX 656
P PS+ PP P + P PP P P P + PP PP
Sbjct: 148 PPPSLPPPPPPPPPPPPPRPPSVKPPVVQPKPQPPPSLQPPSPPPPPPTR--PPSVKPPV 205
Query: 657 XXXXPXXFSPPXXGXXXXGXPP 722
P PP PP
Sbjct: 206 VQPKPQ--PPPTLPPPSPPPPP 225
>05_01_0142 - 940421-940701,941262-941574
Length = 197
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/58 (31%), Positives = 19/58 (32%), Gaps = 4/58 (6%)
Frame = +3
Query: 561 PXSXXXPPXXXPXPKX---PXPXXKXFPPGXXPP-XXXXXPXXFSPPXXGXXXXGXPP 722
P PP P P P P PPG PP P + PP G PP
Sbjct: 37 PQGYPPPPGAYPPPPGAYPPPPGAYPPPPGAYPPQHGYPQPGGYPPPGGYPQHGGYPP 94
>07_03_0560 + 19479597-19480667
Length = 356
Score = 28.3 bits (60), Expect = 7.1
Identities = 19/60 (31%), Positives = 19/60 (31%)
Frame = -3
Query: 757 GGXXXFXXXXKXGGXPXXXXPXXGGEKXXGXXXXXGGFXPGGKXFXXGXGXXGXGFXXGG 578
GG K GG GGE GG GG G G G GF GG
Sbjct: 95 GGGGLGGGGGKGGGFGGGVGGGGGGEGGGLGGGGGGGLGGGGGGGVGGGGGQGGGFGAGG 154
>03_01_0515 - 3864796-3865425
Length = 209
Score = 28.3 bits (60), Expect = 7.1
Identities = 20/82 (24%), Positives = 21/82 (25%)
Frame = +3
Query: 477 PYPSINXGGPPXX*TXXPGXXVINPX*XPXSXXXPPXXXPXPKXPXPXXKXFPPGXXPPX 656
P P PP P +P PP P P PP PP
Sbjct: 40 PSPPTEASPPPLA---PPPSVTSSPPPPAAGPLMPPPPPPPSVTSSPPPPPLPPPPPPPA 96
Query: 657 XXXXPXXFSPPXXGXXXXGXPP 722
P SPP PP
Sbjct: 97 ASPPPPPPSPPPPSPVKSSPPP 118
>01_01_0070 - 542603-542686,542803-543441
Length = 240
Score = 28.3 bits (60), Expect = 7.1
Identities = 21/83 (25%), Positives = 24/83 (28%)
Frame = +3
Query: 474 TPYPSINXGGPPXX*TXXPGXXVINPX*XPXSXXXPPXXXPXPKXPXPXXKXFPPGXXPP 653
TP P+ PP T P P + P P P K PP PP
Sbjct: 39 TPVPTAPAKSPPAPATPAPTATPTPPVAPAKAPPVAPAVAPVTPPPPTPKKAPPPPVTPP 98
Query: 654 XXXXXPXXFSPPXXGXXXXGXPP 722
P +PP PP
Sbjct: 99 --PVTPPPVTPPPVSPPPATPPP 119
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 27.9 bits (59), Expect = 9.4
Identities = 21/71 (29%), Positives = 23/71 (32%)
Frame = +3
Query: 477 PYPSINXGGPPXX*TXXPGXXVINPX*XPXSXXXPPXXXPXPKXPXPXXKXFPPGXXPPX 656
P P + PP P V +P P PP P P P PP PP
Sbjct: 1193 PPPPVKSPPPPAP-VISPPPPVKSPP-PPAPVILPPPPVKSPPPPAPVISPPPPEKSPP- 1249
Query: 657 XXXXPXXFSPP 689
P SPP
Sbjct: 1250 -PAAPVILSPP 1259
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/47 (31%), Positives = 15/47 (31%)
Frame = +3
Query: 549 PX*XPXSXXXPPXXXPXPKXPXPXXKXFPPGXXPPXXXXXPXXFSPP 689
P P PP P P P P PP PP P PP
Sbjct: 609 PPILPNRSVPPP---PPPPPPLPNHSVLPPPPPPPPPPSLPNRLVPP 652
>08_01_0059 - 394001-394708
Length = 235
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/63 (25%), Positives = 19/63 (30%), Gaps = 3/63 (4%)
Frame = +3
Query: 579 PPXXXPXPKXPXPXXKXFPPGXXP---PXXXXXPXXFSPPXXGXXXXGXPPXXXXXXKXX 749
P P P P P + PP P P P ++PP PP
Sbjct: 7 PRRAPPPPATPPPPPRRAPPPPSPPIRPPPPPTPRPYAPPPPSHPLAPPPPHISPPAPVP 66
Query: 750 XPP 758
PP
Sbjct: 67 PPP 69
>04_03_0904 + 20717005-20718087
Length = 360
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/70 (24%), Positives = 18/70 (25%)
Frame = +3
Query: 549 PX*XPXSXXXPPXXXPXPKXPXPXXKXFPPGXXPPXXXXXPXXFSPPXXGXXXXGXPPXX 728
P P S P P P P P + P P P P PP
Sbjct: 171 PTPTPPSYKPQPKPTPTPYTPTPTPPSYKPQPKPTPTPYTPTPTPPSYKPQPKPNPPPTY 230
Query: 729 XXXXKXXXPP 758
K PP
Sbjct: 231 KPQPKPNPPP 240
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/61 (27%), Positives = 18/61 (29%), Gaps = 1/61 (1%)
Frame = +3
Query: 579 PPXXXPXPKX-PXPXXKXFPPGXXPPXXXXXPXXFSPPXXGXXXXGXPPXXXXXXKXXXP 755
PP P PK P P K PP P P + P PP K
Sbjct: 227 PPTYKPQPKPNPPPTYKPAPPTYKPQPKPNPPPTYKPQPKPTPTPYTPPTYKPQPKPTPT 286
Query: 756 P 758
P
Sbjct: 287 P 287
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,395,050
Number of Sequences: 37544
Number of extensions: 311336
Number of successful extensions: 868
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -