Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_FL5_C15
(768 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB209373-1|BAD92610.1| 410|Homo sapiens CS0DA006YC23 variant pr... 32 2.6
X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage f... 31 3.4
X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein. 31 3.4
BC005000-1|AAH05000.1| 478|Homo sapiens CPSF6 protein protein. 31 3.4
BC000714-1|AAH00714.1| 588|Homo sapiens CPSF6 protein protein. 31 3.4
AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and polyadenyl... 31 3.4
AK127078-1|BAC86815.1| 844|Homo sapiens protein ( Homo sapiens ... 31 6.0
X70944-1|CAA50283.1| 707|Homo sapiens PTB-associated splicing f... 30 7.9
BC051192-1|AAH51192.1| 707|Homo sapiens splicing factor proline... 30 7.9
BC027708-1|AAH27708.1| 525|Homo sapiens SFPQ protein protein. 30 7.9
BC004534-1|AAH04534.2| 634|Homo sapiens SFPQ protein protein. 30 7.9
AL590434-2|CAI12467.1| 707|Homo sapiens splicing factor proline... 30 7.9
>AB209373-1|BAD92610.1| 410|Homo sapiens CS0DA006YC23 variant
protein.
Length = 410
Score = 31.9 bits (69), Expect = 2.6
Identities = 18/66 (27%), Positives = 19/66 (28%)
Frame = +3
Query: 561 PXSXXXPPXXXPXPKXPXPXXKXFPPGXXPPXXXXXPXXFSPPXXGXXXXGXPPXXXXXX 740
P PP P P +PP PP P F PP G PP
Sbjct: 286 PSYGALPPAYGPPAHLPY-HPHVYPPNPPPPPVPPPPASFPPPAIPPPTPGYPPPPPTYN 344
Query: 741 KXXXPP 758
PP
Sbjct: 345 PNFPPP 350
>X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage
factor I 68 kDa subunit protein.
Length = 551
Score = 31.5 bits (68), Expect = 3.4
Identities = 23/74 (31%), Positives = 23/74 (31%), Gaps = 1/74 (1%)
Frame = +3
Query: 471 GTPYPSINXGGPPXX*TXXPGXXVINPX*XPXSXXXP-PXXXPXPKXPXPXXKXFPPGXX 647
G P P G PP G P P P P P P P PPG
Sbjct: 295 GPPPPVPGYGPPPGPPPPQQGPP---PPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAP 351
Query: 648 PPXXXXXPXXFSPP 689
PP P F PP
Sbjct: 352 PPAPHVNPAFFPPP 365
Score = 30.3 bits (65), Expect = 7.9
Identities = 22/75 (29%), Positives = 24/75 (32%), Gaps = 4/75 (5%)
Frame = +3
Query: 477 PYPSINXGGPPXX*TXXPGXXVINPX*X--PXSXXXPPXXXPXPKXPX--PXXKXFPPGX 644
P P + GPP P V+ P P PP P P P PPG
Sbjct: 237 PRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGP 296
Query: 645 XPPXXXXXPXXFSPP 689
PP P PP
Sbjct: 297 PPPVPGYGPPPGPPP 311
>X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein.
Length = 551
Score = 31.5 bits (68), Expect = 3.4
Identities = 23/74 (31%), Positives = 23/74 (31%), Gaps = 1/74 (1%)
Frame = +3
Query: 471 GTPYPSINXGGPPXX*TXXPGXXVINPX*XPXSXXXP-PXXXPXPKXPXPXXKXFPPGXX 647
G P P G PP G P P P P P P P PPG
Sbjct: 295 GPPPPVPGYGPPPGPPPPQQGPP---PPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAP 351
Query: 648 PPXXXXXPXXFSPP 689
PP P F PP
Sbjct: 352 PPAPHVNPAFFPPP 365
Score = 30.3 bits (65), Expect = 7.9
Identities = 22/75 (29%), Positives = 24/75 (32%), Gaps = 4/75 (5%)
Frame = +3
Query: 477 PYPSINXGGPPXX*TXXPGXXVINPX*X--PXSXXXPPXXXPXPKXPX--PXXKXFPPGX 644
P P + GPP P V+ P P PP P P P PPG
Sbjct: 237 PRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGP 296
Query: 645 XPPXXXXXPXXFSPP 689
PP P PP
Sbjct: 297 PPPVPGYGPPPGPPP 311
>BC005000-1|AAH05000.1| 478|Homo sapiens CPSF6 protein protein.
Length = 478
Score = 31.5 bits (68), Expect = 3.4
Identities = 23/74 (31%), Positives = 23/74 (31%), Gaps = 1/74 (1%)
Frame = +3
Query: 471 GTPYPSINXGGPPXX*TXXPGXXVINPX*XPXSXXXP-PXXXPXPKXPXPXXKXFPPGXX 647
G P P G PP G P P P P P P P PPG
Sbjct: 222 GPPPPVPGYGPPPGPPPPQQGPP---PPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAP 278
Query: 648 PPXXXXXPXXFSPP 689
PP P F PP
Sbjct: 279 PPAPHVNPAFFPPP 292
>BC000714-1|AAH00714.1| 588|Homo sapiens CPSF6 protein protein.
Length = 588
Score = 31.5 bits (68), Expect = 3.4
Identities = 23/74 (31%), Positives = 23/74 (31%), Gaps = 1/74 (1%)
Frame = +3
Query: 471 GTPYPSINXGGPPXX*TXXPGXXVINPX*XPXSXXXP-PXXXPXPKXPXPXXKXFPPGXX 647
G P P G PP G P P P P P P P PPG
Sbjct: 332 GPPPPVPGYGPPPGPPPPQQGPP---PPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAP 388
Query: 648 PPXXXXXPXXFSPP 689
PP P F PP
Sbjct: 389 PPAPHVNPAFFPPP 402
Score = 30.3 bits (65), Expect = 7.9
Identities = 22/75 (29%), Positives = 24/75 (32%), Gaps = 4/75 (5%)
Frame = +3
Query: 477 PYPSINXGGPPXX*TXXPGXXVINPX*X--PXSXXXPPXXXPXPKXPX--PXXKXFPPGX 644
P P + GPP P V+ P P PP P P P PPG
Sbjct: 274 PRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGP 333
Query: 645 XPPXXXXXPXXFSPP 689
PP P PP
Sbjct: 334 PPPVPGYGPPPGPPP 348
>AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and
polyadenylation specific factor 6, 68 kD subunit variant
protein.
Length = 551
Score = 31.5 bits (68), Expect = 3.4
Identities = 23/74 (31%), Positives = 23/74 (31%), Gaps = 1/74 (1%)
Frame = +3
Query: 471 GTPYPSINXGGPPXX*TXXPGXXVINPX*XPXSXXXP-PXXXPXPKXPXPXXKXFPPGXX 647
G P P G PP G P P P P P P P PPG
Sbjct: 295 GPPPPVPGYGPPPGPPPPQQGPP---PPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAP 351
Query: 648 PPXXXXXPXXFSPP 689
PP P F PP
Sbjct: 352 PPAPHVNPAFFPPP 365
Score = 30.3 bits (65), Expect = 7.9
Identities = 22/75 (29%), Positives = 24/75 (32%), Gaps = 4/75 (5%)
Frame = +3
Query: 477 PYPSINXGGPPXX*TXXPGXXVINPX*X--PXSXXXPPXXXPXPKXPX--PXXKXFPPGX 644
P P + GPP P V+ P P PP P P P PPG
Sbjct: 237 PRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGP 296
Query: 645 XPPXXXXXPXXFSPP 689
PP P PP
Sbjct: 297 PPPVPGYGPPPGPPP 311
>AK127078-1|BAC86815.1| 844|Homo sapiens protein ( Homo sapiens
cDNA FLJ45135 fis, clone BRAWH3038252, highly similar
to Formin 1 isoform IV. ).
Length = 844
Score = 30.7 bits (66), Expect = 6.0
Identities = 16/48 (33%), Positives = 17/48 (35%)
Frame = +3
Query: 579 PPXXXPXPKXPXPXXKXFPPGXXPPXXXXXPXXFSPPXXGXXXXGXPP 722
PP P P P P PP PP P +PP G PP
Sbjct: 329 PPPPPPPPPLPPPSSAGPPPPPPPPPLPNSP---APPNPGGPPPAPPP 373
>X70944-1|CAA50283.1| 707|Homo sapiens PTB-associated splicing
factor protein.
Length = 707
Score = 30.3 bits (65), Expect = 7.9
Identities = 19/59 (32%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Frame = +3
Query: 549 PX*XPXSXXXPPXXXPXPKX-PXPXXKXFPPGXXPPXXXXXPXXFSPPXXGXXXXGXPP 722
P P + PP P P P P PPG PP +PP G G PP
Sbjct: 132 PPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAG----GPPP 186
>BC051192-1|AAH51192.1| 707|Homo sapiens splicing factor
proline/glutamine-rich (polypyrimidine tract binding
protein as protein.
Length = 707
Score = 30.3 bits (65), Expect = 7.9
Identities = 19/59 (32%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Frame = +3
Query: 549 PX*XPXSXXXPPXXXPXPKX-PXPXXKXFPPGXXPPXXXXXPXXFSPPXXGXXXXGXPP 722
P P + PP P P P P PPG PP +PP G G PP
Sbjct: 132 PPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAG----GPPP 186
>BC027708-1|AAH27708.1| 525|Homo sapiens SFPQ protein protein.
Length = 525
Score = 30.3 bits (65), Expect = 7.9
Identities = 19/59 (32%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Frame = +3
Query: 549 PX*XPXSXXXPPXXXPXPKX-PXPXXKXFPPGXXPPXXXXXPXXFSPPXXGXXXXGXPP 722
P P + PP P P P P PPG PP +PP G G PP
Sbjct: 132 PPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAG----GPPP 186
>BC004534-1|AAH04534.2| 634|Homo sapiens SFPQ protein protein.
Length = 634
Score = 30.3 bits (65), Expect = 7.9
Identities = 19/59 (32%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Frame = +3
Query: 549 PX*XPXSXXXPPXXXPXPKX-PXPXXKXFPPGXXPPXXXXXPXXFSPPXXGXXXXGXPP 722
P P + PP P P P P PPG PP +PP G G PP
Sbjct: 59 PPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAG----GPPP 113
>AL590434-2|CAI12467.1| 707|Homo sapiens splicing factor
proline/glutamine-rich (polypyrimidine tract binding
protein as protein.
Length = 707
Score = 30.3 bits (65), Expect = 7.9
Identities = 19/59 (32%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Frame = +3
Query: 549 PX*XPXSXXXPPXXXPXPKX-PXPXXKXFPPGXXPPXXXXXPXXFSPPXXGXXXXGXPP 722
P P + PP P P P P PPG PP +PP G G PP
Sbjct: 132 PPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAG----GPPP 186
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,186,559
Number of Sequences: 237096
Number of extensions: 1776320
Number of successful extensions: 3594
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3210
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9255747988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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