Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_FL5_C14
         (780 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...    31   1.0  
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...    28   7.2  

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 58  ISATMSGGLDVLALNEEDVTKMLAATTHLGGRKC 159
           ++A   G    L+  E+DV  MLAA  HLG + C
Sbjct: 1   MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNC 34


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 91  LALNEEDVTKMLAATTHLGGRKC 159
           L+  E+D+  MLAA  HLG + C
Sbjct: 12  LSQREQDIQMMLAADVHLGTKNC 34


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,722,990
Number of Sequences: 37544
Number of extensions: 337649
Number of successful extensions: 401
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)